1 HisKA_3#1
36-101 aa · 66 aa · 28.9% of protein
Raw token
HisKA_3:36:0.000000000000454:101:68:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL19_RS17480
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865465
ClassHKTypeClassicLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865465#CDL19_RS17480Stable P2CS identifier used across views.
GenomeGCF_002865465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 228 aa (67.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
140-226 aa · 87 aa · 38.2% of protein
Raw token
HATPase_c:140:0.000000000285:226:101:109- Raw architecture: HisKA_3:36:0.000000000000454:101:68:68#HATPase_c:140:0.000000000285:226:101:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865465::NZ_NIHP01000010.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25918-27229Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL19_07650RefSeq proteinWP_009245038.1
Context group ID
GCF_002865465::NZ_NIHP01000010.1::G00006Context members
CDL19_RS07660CDL19_RS17480
Partner locus tags
CDL19_RS07660CDL19_RS17480
Partner old locus tags
CDL19_07645CDL19_07650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009245038.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1AY70Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1AY70_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL19_RS17480Primary locus identifier stored in the genes table.
Old locus tagCDL19_07650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHP01000010.1Sequence record reported by the local genomic context database.
Genomic interval26 543-27 229 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 918-27 229 ntGCF_002865465::NZ_NIHP01000010.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865465::NZ_NIHP01000010.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHP01000010.1All displayed genes belong to this local TCS context.
Neighborhood span25 918-27 229 nt1 312 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 918 nt27 229 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL19_RS07660GCF_002865465#CDL19_RS07660
RRNarL
25 918-26 538 nt · Reverse (-)
CDL19_RS17480GCF_002865465#CDL19_RS17480
HKClassicCurrent focus
26 543-27 229 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_042847305#ACGHAT_RS04190Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2889585
Simplified PFAM architecture for HKOC_2889585
PFAM domain coverage: 65 / 298 aa (21.8%)
1 aa298 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[106-170]
- Domain count: 1
- Matched identifier: HKOC_2889585
- Positioned domains: HisKA_3 106-170
Cluster members and taxonomy
Representative gene: GCF_042847305#ACGHAT_RS04190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865465
AssemblyASM286546v1 · Scaffoldhaploid
Genome composition3 421 101 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key