1 HAMP#1
166-233 aa · 68 aa · 14.7% of protein
Raw token
HAMP:166:0.000000000202:233:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL19_RS09090
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865465
ClassHKTypeClassicLength463 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865465#CDL19_RS09090Stable P2CS identifier used across views.
GenomeGCF_002865465Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length463 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 463 aa (52.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa463 aa
Domain-by-domain annotation3 items
2 HisKA#2
237-302 aa · 66 aa · 14.3% of protein
Raw token
HisKA:237:0.000000000000115:302:66:643 HATPase_c#3
350-460 aa · 111 aa · 24.0% of protein
Raw token
HATPase_c:350:1.05e-32:460:111:109- Raw architecture: HAMP:166:0.000000000202:233:68:69#HisKA:237:0.000000000000115:302:66:64#HATPase_c:350:1.05e-32:460:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865465::NZ_NIHP01000013.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52309-54430Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL19_09075RefSeq proteinWP_009243919.1
Context group ID
GCF_002865465::NZ_NIHP01000013.1::G00009Context members
CDL19_RS09085CDL19_RS09090
Partner locus tags
CDL19_RS09085CDL19_RS09090
Partner old locus tags
CDL19_09070CDL19_09075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009243919.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ3KLH8Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ3KLH8_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL19_RS09090Primary locus identifier stored in the genes table.
Old locus tagCDL19_09075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHP01000013.1Sequence record reported by the local genomic context database.
Genomic interval53 039-54 430 nt1 392 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 309-54 430 ntGCF_002865465::NZ_NIHP01000013.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865465::NZ_NIHP01000013.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHP01000013.1All displayed genes belong to this local TCS context.
Neighborhood span52 309-54 430 nt2 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 309 nt54 430 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL19_RS09085GCF_002865465#CDL19_RS09085
RROmpR
52 309-53 001 nt · Forward (+)
CDL19_RS09090GCF_002865465#CDL19_RS09090
HKClassicCurrent focus
53 039-54 430 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS03315Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1796020
Simplified PFAM architecture for HKOC_1796020
PFAM domain coverage: 176 / 463 aa (38.0%)
1 aa463 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[238-302] | HATPase_c[350-460]
- Domain count: 2
- Matched identifier: HKOC_1796020
- Positioned domains: HisKA 238-302 ; HATPase_c 350-460
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS03315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865465
AssemblyASM286546v1 · Scaffoldhaploid
Genome composition3 421 101 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key