1 HAMP#1
300-369 aa · 70 aa · 11.6% of protein
Raw token
HAMP:300:0.0000000589:369:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL27_RS09260
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865405
ClassHKTypeClassicLength605 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865405#CDL27_RS09260Stable P2CS identifier used across views.
GenomeGCF_002865405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length605 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 605 aa (42.8%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa605 aa
Domain-by-domain annotation3 items
2 His_kinase#2
391-471 aa · 81 aa · 13.4% of protein
Raw token
His_kinase:391:5.53e-32:471:81:803 HATPase_c#3
490-597 aa · 108 aa · 17.9% of protein
Raw token
HATPase_c:490:4.6e-16:597:110:109- Raw architecture: HAMP:300:0.0000000589:369:70:69#His_kinase:391:5.53e-32:471:81:80#HATPase_c:490:4.6e-16:597:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865405::NZ_NIHO01000019.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25581-28933Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL27_09235RefSeq proteinWP_055168901.1
Context group ID
GCF_002865405::NZ_NIHO01000019.1::G00012Context members
CDL27_RS09260CDL27_RS09265
Partner locus tags
CDL27_RS09260CDL27_RS09265
Partner old locus tags
CDL27_09235CDL27_09240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055168901.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5NR69Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5NR69_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL27_RS09260Primary locus identifier stored in the genes table.
Old locus tagCDL27_09235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHO01000019.1Sequence record reported by the local genomic context database.
Genomic interval25 581-27 398 nt1 818 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 581-28 933 ntGCF_002865405::NZ_NIHO01000019.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865405::NZ_NIHO01000019.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHO01000019.1All displayed genes belong to this local TCS context.
Neighborhood span25 581-28 933 nt3 353 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 581 nt28 933 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL27_RS09260GCF_002865405#CDL27_RS09260
HKClassicCurrent focus
25 581-27 398 nt · Forward (+)
CDL27_RS09265GCF_002865405#CDL27_RS09265
RRunclassified
27 395-28 933 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406655#ARA00_RS07805Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1028819
Simplified PFAM architecture for HKOC_1028819
PFAM domain coverage: 187 / 605 aa (30.9%)
1 aa605 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[391-471] | HATPase_c[492-597]
- Domain count: 2
- Matched identifier: HKOC_1028819
- Positioned domains: His_kinase 391-471 ; HATPase_c 492-597
Cluster members and taxonomy
Representative gene: GCF_001406655#ARA00_RS07805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865405
AssemblyASM286540v1 · Scaffoldhaploid
Genome composition3 440 746 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 79 · HK 39 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key