1 dCache_1#1
44-287 aa · 244 aa · 40.6% of protein
Raw token
dCache_1:44:1.87e-19:287:248:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL27_RS09175
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865405
ClassHKTypeClassicLength601 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865405#CDL27_RS09175Stable P2CS identifier used across views.
GenomeGCF_002865405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length601 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage505 / 601 aa (84.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa601 aa
Domain-by-domain annotation4 items
2 HAMP#2
306-375 aa · 70 aa · 11.6% of protein
Raw token
HAMP:306:0.00000000000101:375:70:693 His_kinase#3
390-469 aa · 80 aa · 13.3% of protein
Raw token
His_kinase:390:2.71e-36:469:80:804 HATPase_c#4
481-591 aa · 111 aa · 18.5% of protein
Raw token
HATPase_c:481:7.22e-16:591:115:109- Raw architecture: dCache_1:44:1.87e-19:287:248:195#HAMP:306:0.00000000000101:375:70:69#His_kinase:390:2.71e-36:469:80:80#HATPase_c:481:7.22e-16:591:115:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865405::NZ_NIHO01000019.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1251-4664Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL27_09150RefSeq proteinWP_180959151.1
Context group ID
GCF_002865405::NZ_NIHO01000019.1::G00011Context members
CDL27_RS09175CDL27_RS09180
Partner locus tags
CDL27_RS09175CDL27_RS09180
Partner old locus tags
CDL27_09150CDL27_09155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_180959151.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL27_RS09175Primary locus identifier stored in the genes table.
Old locus tagCDL27_09150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHO01000019.1Sequence record reported by the local genomic context database.
Genomic interval1 251-3 056 nt1 806 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 251-4 664 ntGCF_002865405::NZ_NIHO01000019.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865405::NZ_NIHO01000019.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHO01000019.1All displayed genes belong to this local TCS context.
Neighborhood span1 251-4 664 nt3 414 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 251 nt4 664 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL27_RS09175GCF_002865405#CDL27_RS09175
HKClassicCurrent focus
1 251-3 056 nt · Reverse (-)
CDL27_RS09180GCF_002865405#CDL27_RS09180
RRunclassified
3 060-4 664 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865405#CDL27_RS09175The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1048520
Simplified PFAM architecture for HKOC_1048520
PFAM domain coverage: 484 / 601 aa (80.5%)
1 aa601 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[45-287] | HAMP[322-374] | His_kinase[390-469] | HATPase_c[484-591]
- Domain count: 4
- Matched identifier: HKOC_1048520
- Positioned domains: dCache_1 45-287 ; HAMP 322-374 ; His_kinase 390-469 ; HATPase_c 484-591
Cluster members and taxonomy
Representative gene: GCF_002865405#CDL27_RS09175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865405
AssemblyASM286540v1 · Scaffoldhaploid
Genome composition3 440 746 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 79 · HK 39 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key