1 HAMP#1
92-161 aa · 70 aa · 17.8% of protein
Raw token
HAMP:92:0.00000000204:161:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL27_RS07420
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865405
ClassHKTypeClassicLength393 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865405#CDL27_RS07420Stable P2CS identifier used across views.
GenomeGCF_002865405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length393 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 393 aa (60.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa393 aa
Domain-by-domain annotation3 items
2 HisKA#2
178-241 aa · 64 aa · 16.3% of protein
Raw token
HisKA:178:0.000000434:241:64:643 HATPase_c#3
286-389 aa · 104 aa · 26.5% of protein
Raw token
HATPase_c:286:7.28e-19:389:107:109- Raw architecture: HAMP:92:0.00000000204:161:70:69#HisKA:178:0.000000434:241:64:64#HATPase_c:286:7.28e-19:389:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865405::NZ_NIHO01000013.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13117-14960Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL27_07405RefSeq proteinWP_077325132.1
Context group ID
GCF_002865405::NZ_NIHO01000013.1::G00006Context members
CDL27_RS07415CDL27_RS07420
Partner locus tags
CDL27_RS07415CDL27_RS07420
Partner old locus tags
CDL27_07400CDL27_07405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_077325132.1Primary protein accession used for annex mappings.
UniProt accessionA0A391P4P8Primary UniProt accession resolved in the annex database.
UniProt IDA0A391P4P8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL27_RS07420Primary locus identifier stored in the genes table.
Old locus tagCDL27_07405Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHO01000013.1Sequence record reported by the local genomic context database.
Genomic interval13 779-14 960 nt1 182 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 117-14 960 ntGCF_002865405::NZ_NIHO01000013.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865405::NZ_NIHO01000013.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHO01000013.1All displayed genes belong to this local TCS context.
Neighborhood span13 117-14 960 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 117 nt14 960 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL27_RS07415GCF_002865405#CDL27_RS07415
RROmpR
13 117-13 791 nt · Forward (+)
CDL27_RS07420GCF_002865405#CDL27_RS07420
HKClassicCurrent focus
13 779-14 960 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001998765#DO83_RS00445Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2504442
Simplified PFAM architecture for HKOC_2504442
PFAM domain coverage: 216 / 393 aa (55.0%)
1 aa393 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[112-160] | HisKA[178-241] | HATPase_c[287-389]
- Domain count: 3
- Matched identifier: HKOC_2504442
- Positioned domains: HAMP 112-160 ; HisKA 178-241 ; HATPase_c 287-389
Cluster members and taxonomy
Representative gene: GCF_001998765#DO83_RS00445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865405
AssemblyASM286540v1 · Scaffoldhaploid
Genome composition3 440 746 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 79 · HK 39 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key