1 Response_reg#1
5-112 aa · 108 aa · 48.2% of protein
Raw token
Response_reg:5:2.56e-32:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL27_RS07415
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_002865405
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865405#CDL27_RS07415Stable P2CS identifier used across views.
GenomeGCF_002865405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:147:1.65e-22:222:77:77- Raw architecture: Response_reg:5:2.56e-32:112:110:111#Trans_reg_C:147:1.65e-22:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865405::NZ_NIHO01000013.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13117-14960Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL27_07400RefSeq proteinWP_077325134.1
Context group ID
GCF_002865405::NZ_NIHO01000013.1::G00006Context members
CDL27_RS07415CDL27_RS07420
Partner locus tags
CDL27_RS07415CDL27_RS07420
Partner old locus tags
CDL27_07400CDL27_07405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_077325134.1Primary protein accession used for annex mappings.
UniProt accessionA0A1Q2C3D6Primary UniProt accession resolved in the annex database.
UniProt IDA0A1Q2C3D6_ANAHADisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL27_RS07415Primary locus identifier stored in the genes table.
Old locus tagCDL27_07400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHO01000013.1Sequence record reported by the local genomic context database.
Genomic interval13 117-13 791 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 117-14 960 ntGCF_002865405::NZ_NIHO01000013.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865405::NZ_NIHO01000013.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHO01000013.1All displayed genes belong to this local TCS context.
Neighborhood span13 117-14 960 nt1 844 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 117 nt14 960 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL27_RS07415GCF_002865405#CDL27_RS07415
RROmpRCurrent focus
13 117-13 791 nt · Forward (+)
CDL27_RS07420GCF_002865405#CDL27_RS07420
HKClassic
13 779-14 960 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001998765#DO83_RS00450Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1538705
Simplified PFAM architecture for RROC_1538705
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[147-221]
- Domain count: 2
- Matched identifier: RROC_1538705
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 147-221 ; Trans_reg_C 147-221
Cluster members and taxonomy
Representative gene: GCF_001998765#DO83_RS00450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865405
AssemblyASM286540v1 · Scaffoldhaploid
Genome composition3 440 746 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 79 · HK 39 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key