1 HisKA#1
123-189 aa · 67 aa · 19.5% of protein
Raw token
HisKA:123:0.000000155:189:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL27_RS07385
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865405
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865405#CDL27_RS07385Stable P2CS identifier used across views.
GenomeGCF_002865405Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 343 aa (49.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa343 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
241-343 aa · 103 aa · 30.0% of protein
Raw token
HATPase_c:241:2.3e-28:343:103:109- Raw architecture: HisKA:123:0.000000155:189:67:64#HATPase_c:241:2.3e-28:343:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865405::NZ_NIHO01000013.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7147-8867Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL27_07370RefSeq proteinWP_101872282.1
Context group ID
GCF_002865405::NZ_NIHO01000013.1::G00005Context members
CDL27_RS07380CDL27_RS07385
Partner locus tags
CDL27_RS07380CDL27_RS07385
Partner old locus tags
CDL27_07365CDL27_07370
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_101872282.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL27_RS07385Primary locus identifier stored in the genes table.
Old locus tagCDL27_07370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHO01000013.1Sequence record reported by the local genomic context database.
Genomic interval7 836-8 867 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 147-8 867 ntGCF_002865405::NZ_NIHO01000013.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865405::NZ_NIHO01000013.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHO01000013.1All displayed genes belong to this local TCS context.
Neighborhood span7 147-8 867 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 147 nt8 867 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL27_RS07380GCF_002865405#CDL27_RS07380
RROmpR
7 147-7 839 nt · Forward (+)
CDL27_RS07385GCF_002865405#CDL27_RS07385
HKClassicCurrent focus
7 836-8 867 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865355#CDL25_RS10655Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2828651
Simplified PFAM architecture for HKOC_2828651
PFAM domain coverage: 174 / 343 aa (50.7%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[235-342]
- Domain count: 2
- Matched identifier: HKOC_2828651
- Positioned domains: HisKA 124-189 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_002865355#CDL25_RS10655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865405
AssemblyASM286540v1 · Scaffoldhaploid
Genome composition3 440 746 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 79 · HK 39 · RR 40CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key