1 Response_reg#1
6-67 aa · 62 aa · 64.6% of protein
Raw token
Response_reg:6:5.27e-21:67:62:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL21_RS15550
Response regulator, CheY family
Mediterraneibacter gnavus · GCF_002865385
ClassRRTypeCheYLength96 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865385#CDL21_RS15550Stable P2CS identifier used across views.
GenomeGCF_002865385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length96 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage62 / 96 aa (64.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa96 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:5.27e-21:67:62:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865385::NZ_NIHV01000013.1::G00011
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span76288-76578Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_002865385::NZ_NIHV01000013.1::G00011Context members
CDL21_RS15550
Partner locus tags
CDL21_RS15550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022037347.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q4HXN3Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q4HXN3_MEDGNDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL21_RS15550Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_NIHV01000013.1Sequence record reported by the local genomic context database.
Genomic interval76 288-76 578 nt291 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span76 288-76 578 ntGCF_002865385::NZ_NIHV01000013.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865385::NZ_NIHV01000013.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHV01000013.1All displayed genes belong to this local TCS context.
Neighborhood span76 288-76 578 nt291 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 288 nt76 578 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDL21_RS15550GCF_002865385#CDL21_RS15550
RRCheYCurrent focus
76 288-76 578 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_026804895#OZZ12_RS09515Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2470811
Simplified PFAM architecture for RROC_2470811
PFAM domain coverage: 66 / 104 aa (63.5%)
1 aa104 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[14-79]
- Domain count: 1
- Matched identifier: RROC_2470811
- Positioned domains: Response_reg 14-79
Cluster members and taxonomy
Representative gene: GCF_026804895#OZZ12_RS09515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865385
AssemblyASM286538v1 · Scaffoldhaploid
Genome composition3 060 122 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key