1 HAMP#1
160-229 aa · 70 aa · 14.8% of protein
Raw token
HAMP:160:0.00000000000000273:229:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL21_RS09160
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865385
ClassHKTypeClassicLength472 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865385#CDL21_RS09160Stable P2CS identifier used across views.
GenomeGCF_002865385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length472 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 472 aa (51.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa472 aa
Domain-by-domain annotation3 items
2 HisKA#2
254-319 aa · 66 aa · 14.0% of protein
Raw token
HisKA:254:0.000000000141:319:66:643 HATPase_c#3
365-472 aa · 108 aa · 22.9% of protein
Raw token
HATPase_c:365:9.25e-22:472:109:109- Raw architecture: HAMP:160:0.00000000000000273:229:70:69#HisKA:254:0.000000000141:319:66:64#HATPase_c:365:9.25e-22:472:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865385::NZ_NIHV01000012.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50621-52694Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL21_09155RefSeq proteinWP_022037877.1
Context group ID
GCF_002865385::NZ_NIHV01000012.1::G00009Context members
CDL21_RS09160CDL21_RS09165
Partner locus tags
CDL21_RS09160CDL21_RS09165
Partner old locus tags
CDL21_09155CDL21_09160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022037877.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q6F7C2Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q6F7C2_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL21_RS09160Primary locus identifier stored in the genes table.
Old locus tagCDL21_09155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHV01000012.1Sequence record reported by the local genomic context database.
Genomic interval50 621-52 039 nt1 419 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span50 621-52 694 ntGCF_002865385::NZ_NIHV01000012.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865385::NZ_NIHV01000012.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHV01000012.1All displayed genes belong to this local TCS context.
Neighborhood span50 621-52 694 nt2 074 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 621 nt52 694 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL21_RS09160GCF_002865385#CDL21_RS09160
HKClassicCurrent focus
50 621-52 039 nt · Reverse (-)
CDL21_RS09165GCF_002865385#CDL21_RS09165
RROmpR
52 023-52 694 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865305#CDL24_RS12795Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1698714
Simplified PFAM architecture for HKOC_1698714
PFAM domain coverage: 223 / 472 aa (47.2%)
1 aa472 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-228] | HisKA[255-319] | HATPase_c[365-471]
- Domain count: 3
- Matched identifier: HKOC_1698714
- Positioned domains: HAMP 178-228 ; HisKA 255-319 ; HATPase_c 365-471
Cluster members and taxonomy
Representative gene: GCF_002865305#CDL24_RS12795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865385
AssemblyASM286538v1 · Scaffoldhaploid
Genome composition3 060 122 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key