1 sCache_like#1
70-131 aa · 62 aa · 14.0% of protein
Raw token
sCache_like:70:0.00000000555:131:62:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL21_RS08885
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865385
ClassHKTypeClassicLength442 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865385#CDL21_RS08885Stable P2CS identifier used across views.
GenomeGCF_002865385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length442 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 442 aa (53.8%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa442 aa
Domain-by-domain annotation3 items
2 HisKA#2
218-284 aa · 67 aa · 15.2% of protein
Raw token
HisKA:218:2.59e-18:284:67:643 HATPase_c#3
328-436 aa · 109 aa · 24.7% of protein
Raw token
HATPase_c:328:4.42e-24:436:109:109- Raw architecture: sCache_like:70:0.00000000555:131:62:114#HisKA:218:2.59e-18:284:67:64#HATPase_c:328:4.42e-24:436:109:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865385::NZ_NIHV01000011.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span124641-126639Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL21_08885RefSeq proteinWP_101874912.1
Context group ID
GCF_002865385::NZ_NIHV01000011.1::G00008Context members
CDL21_RS08880CDL21_RS08885
Partner locus tags
CDL21_RS08880CDL21_RS08885
Partner old locus tags
CDL21_08880CDL21_08885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101874912.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q6F874Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q6F874_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL21_RS08885Primary locus identifier stored in the genes table.
Old locus tagCDL21_08885Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHV01000011.1Sequence record reported by the local genomic context database.
Genomic interval125 311-126 639 nt1 329 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span124 641-126 639 ntGCF_002865385::NZ_NIHV01000011.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865385::NZ_NIHV01000011.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHV01000011.1All displayed genes belong to this local TCS context.
Neighborhood span124 641-126 639 nt1 999 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
124 641 nt126 639 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL21_RS08880GCF_002865385#CDL21_RS08880
RROmpR
124 641-125 321 nt · Forward (+)
CDL21_RS08885GCF_002865385#CDL21_RS08885
HKClassicCurrent focus
125 311-126 639 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865305#CDL24_RS08665Use this link to inspect the representative gene detail.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2053536
Simplified PFAM architecture for HKOC_2053536
PFAM domain coverage: 242 / 442 aa (54.8%)
1 aa442 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[64-131] | HisKA[218-284] | HATPase_c[331-437]
- Domain count: 3
- Matched identifier: HKOC_2053536
- Positioned domains: sCache_like 64-131 ; HisKA 218-284 ; HATPase_c 331-437
Cluster members and taxonomy
Representative gene: GCF_002865305#CDL24_RS08665
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865385
AssemblyASM286538v1 · Scaffoldhaploid
Genome composition3 060 122 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key