1 Response_reg#1
4-116 aa · 113 aa · 22.3% of protein
Raw token
Response_reg:4:3.36e-31:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL21_RS06315
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_002865385
ClassRRTypeunclassifiedLength507 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865385#CDL21_RS06315Stable P2CS identifier used across views.
GenomeGCF_002865385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length507 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 507 aa (37.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa507 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
413-453 aa · 41 aa · 8.1% of protein
Raw token
HTH_AraC:413:0.00000000178:453:41:423 HTH_AraC#3
468-503 aa · 36 aa · 7.1% of protein
Raw token
HTH_AraC:468:0.0000000046:503:36:42- Raw architecture: Response_reg:4:3.36e-31:116:113:111#HTH_AraC:413:0.00000000178:453:41:42#HTH_AraC:468:0.0000000046:503:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865385::NZ_NIHV01000008.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5166-8619Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL21_06310RefSeq proteinWP_101874745.1
Context group ID
GCF_002865385::NZ_NIHV01000008.1::G00040Context members
CDL21_RS06310CDL21_RS06315
Partner locus tags
CDL21_RS06310CDL21_RS06315
Partner old locus tags
CDL21_06305CDL21_06310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101874745.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q6F8P7Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q6F8P7_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL21_RS06315Primary locus identifier stored in the genes table.
Old locus tagCDL21_06310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHV01000008.1Sequence record reported by the local genomic context database.
Genomic interval7 096-8 619 nt1 524 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 166-8 619 ntGCF_002865385::NZ_NIHV01000008.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865385::NZ_NIHV01000008.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHV01000008.1All displayed genes belong to this local TCS context.
Neighborhood span5 166-8 619 nt3 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 166 nt8 619 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL21_RS06310GCF_002865385#CDL21_RS06310
HKClassic
5 166-7 121 nt · Forward (+)
CDL21_RS06315GCF_002865385#CDL21_RS06315
RRunclassifiedCurrent focus
7 096-8 619 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865305#CDL24_RS06115Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0150168
Simplified PFAM architecture for RROC_0150168
PFAM domain coverage: 190 / 507 aa (37.5%)
1 aa507 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[426-504]
- Domain count: 2
- Matched identifier: RROC_0150168
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_18 426-504 ; HTH_18 426-504
Cluster members and taxonomy
Representative gene: GCF_002865305#CDL24_RS06115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865385
AssemblyASM286538v1 · Scaffoldhaploid
Genome composition3 060 122 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key