1 Response_reg#1
4-108 aa · 105 aa · 43.8% of protein
Raw token
Response_reg:4:2.5e-19:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL21_RS05040
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_002865385
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865385#CDL21_RS05040Stable P2CS identifier used across views.
GenomeGCF_002865385Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 240 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-232 aa · 96 aa · 40.0% of protein
Raw token
LytTR:137:3.53e-18:232:102:98- Raw architecture: Response_reg:4:2.5e-19:108:108:111#LytTR:137:3.53e-18:232:102:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865385::NZ_NIHV01000006.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span64330-65052Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL21_05035RefSeq proteinWP_055169347.1
Context group ID
GCF_002865385::NZ_NIHV01000006.1::G00036Context members
CDL21_RS05040
Partner locus tags
CDL21_RS05040
Partner old locus tags
CDL21_05035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055169347.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5NU73Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5NU73_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL21_RS05040Primary locus identifier stored in the genes table.
Old locus tagCDL21_05035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHV01000006.1Sequence record reported by the local genomic context database.
Genomic interval64 330-65 052 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span64 330-65 052 ntGCF_002865385::NZ_NIHV01000006.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865385::NZ_NIHV01000006.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHV01000006.1All displayed genes belong to this local TCS context.
Neighborhood span64 330-65 052 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
64 330 nt65 052 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDL21_RS05040GCF_002865385#CDL21_RS05040
RRLytTRCurrent focus
64 330-65 052 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406655#ARA00_RS11470Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0884972
Simplified PFAM architecture for RROC_0884972
PFAM domain coverage: 206 / 240 aa (85.8%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[138-231]
- Domain count: 2
- Matched identifier: RROC_0884972
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; LytTR 138-231 ; LytTR 138-231
Cluster members and taxonomy
Representative gene: GCF_001406655#ARA00_RS11470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865385
AssemblyASM286538v1 · Scaffoldhaploid
Genome composition3 060 122 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key