1 HisKA#1
73-138 aa · 66 aa · 22.6% of protein
Raw token
HisKA:73:0.00000000000000495:138:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS16285
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865355
ClassHKTypeClassicLength292 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865355#CDL25_RS16285Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length292 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 292 aa (56.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa292 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
188-287 aa · 100 aa · 34.2% of protein
Raw token
HATPase_c:188:0.0000000000000324:287:104:109- Raw architecture: HisKA:73:0.00000000000000495:138:66:64#HATPase_c:188:0.0000000000000324:287:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865355::NZ_NIHR01000062.1::G00045
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3680-4558Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_16240RefSeq proteinWP_101872521.1
Context group ID
GCF_002865355::NZ_NIHR01000062.1::G00045Context members
CDL25_RS16285
Partner locus tags
CDL25_RS16285
Partner old locus tags
CDL25_16240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_101872521.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS16285Primary locus identifier stored in the genes table.
Old locus tagCDL25_16240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000062.1Sequence record reported by the local genomic context database.
Genomic interval3 680-4 558 nt879 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 680-4 558 ntGCF_002865355::NZ_NIHR01000062.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000062.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000062.1All displayed genes belong to this local TCS context.
Neighborhood span3 680-4 558 nt879 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 680 nt4 558 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDL25_RS16285GCF_002865355#CDL25_RS16285
HKClassicCurrent focus
3 680-4 558 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865355#CDL25_RS16285The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2894125
Simplified PFAM architecture for HKOC_2894125
PFAM domain coverage: 163 / 292 aa (55.8%)
1 aa292 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[74-137] | HATPase_c[187-285]
- Domain count: 2
- Matched identifier: HKOC_2894125
- Positioned domains: HisKA 74-137 ; HATPase_c 187-285
Cluster members and taxonomy
Representative gene: GCF_002865355#CDL25_RS16285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key