1 Response_reg#1
4-113 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:4:4.24e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS16270
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_002865355
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865355#CDL25_RS16270Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 221 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-220 aa · 73 aa · 33.0% of protein
Raw token
Trans_reg_C:148:5.35e-26:220:74:77- Raw architecture: Response_reg:4:4.24e-32:113:111:111#Trans_reg_C:148:5.35e-26:220:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865355::NZ_NIHR01000062.1::G00044
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1201-1866Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_16225RefSeq proteinWP_004843374.1
Context group ID
GCF_002865355::NZ_NIHR01000062.1::G00044Context members
CDL25_RS16270
Partner locus tags
CDL25_RS16270
Partner old locus tags
CDL25_16225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004843374.1Primary protein accession used for annex mappings.
UniProt accessionA7B4F6Primary UniProt accession resolved in the annex database.
UniProt IDA7B4F6_MEDG7Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS16270Primary locus identifier stored in the genes table.
Old locus tagCDL25_16225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000062.1Sequence record reported by the local genomic context database.
Genomic interval1 201-1 866 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 201-1 866 ntGCF_002865355::NZ_NIHR01000062.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000062.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000062.1All displayed genes belong to this local TCS context.
Neighborhood span1 201-1 866 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 201 nt1 866 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDL25_RS16270GCF_002865355#CDL25_RS16270
RROmpRCurrent focus
1 201-1 866 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS10670Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1678008
Simplified PFAM architecture for RROC_1678008
PFAM domain coverage: 182 / 221 aa (82.4%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-219]
- Domain count: 2
- Matched identifier: RROC_1678008
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-219 ; Trans_reg_C 148-219
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS10670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key