1 Response_reg#1
6-106 aa · 101 aa · 42.4% of protein
Raw token
Response_reg:6:8.38e-21:106:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS15800
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_002865355
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865355#CDL25_RS15800Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 238 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-228 aa · 88 aa · 37.0% of protein
Raw token
LytTR:141:0.000000000000271:228:93:98- Raw architecture: Response_reg:6:8.38e-21:106:103:111#LytTR:141:0.000000000000271:228:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865355::NZ_NIHR01000052.1::G00040
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4151-4867Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_15750RefSeq proteinWP_009245840.1
Context group ID
GCF_002865355::NZ_NIHR01000052.1::G00040Context members
CDL25_RS15800
Partner locus tags
CDL25_RS15800
Partner old locus tags
CDL25_15750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009245840.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NSH7Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NSH7_MEDG5Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS15800Primary locus identifier stored in the genes table.
Old locus tagCDL25_15750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000052.1Sequence record reported by the local genomic context database.
Genomic interval4 151-4 867 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 151-4 867 ntGCF_002865355::NZ_NIHR01000052.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000052.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000052.1All displayed genes belong to this local TCS context.
Neighborhood span4 151-4 867 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 151 nt4 867 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDL25_RS15800GCF_002865355#CDL25_RS15800
RRLytTRCurrent focus
4 151-4 867 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030167985#MYB93_RS04020Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0836394
Simplified PFAM architecture for RROC_0836394
PFAM domain coverage: 192 / 243 aa (79.0%)
1 aa243 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[10-114] | LytTR[147-233]
- Domain count: 2
- Matched identifier: RROC_0836394
- Positioned domains: Response_reg 10-114 ; LytTR 147-233
Cluster members and taxonomy
Representative gene: GCF_030167985#MYB93_RS04020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key