1 HisKA#1
234-299 aa · 66 aa · 14.5% of protein
Raw token
HisKA:234:0.00000000000000206:299:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS15320
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865355
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865355#CDL25_RS15320Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 454 aa (39.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
344-454 aa · 111 aa · 24.4% of protein
Raw token
HATPase_c:344:8.76e-22:454:111:109- Raw architecture: HisKA:234:0.00000000000000206:299:66:64#HATPase_c:344:8.76e-22:454:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865355::NZ_NIHR01000044.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13462-15476Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_15285RefSeq proteinWP_054352301.1
Context group ID
GCF_002865355::NZ_NIHR01000044.1::G00034Context members
CDL25_RS15315CDL25_RS15320
Partner locus tags
CDL25_RS15315CDL25_RS15320
Partner old locus tags
CDL25_15280CDL25_15285
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_054352301.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS15320Primary locus identifier stored in the genes table.
Old locus tagCDL25_15285Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000044.1Sequence record reported by the local genomic context database.
Genomic interval14 112-15 476 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 462-15 476 ntGCF_002865355::NZ_NIHR01000044.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000044.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000044.1All displayed genes belong to this local TCS context.
Neighborhood span13 462-15 476 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 462 nt15 476 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL25_RS15315GCF_002865355#CDL25_RS15315
RROmpR
13 462-14 121 nt · Forward (+)
CDL25_RS15320GCF_002865355#CDL25_RS15320
HKClassicCurrent focus
14 112-15 476 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865355#CDL25_RS15320The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1914581
Simplified PFAM architecture for HKOC_1914581
PFAM domain coverage: 177 / 454 aa (39.0%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-299] | HATPase_c[344-454]
- Domain count: 2
- Matched identifier: HKOC_1914581
- Positioned domains: HisKA 234-299 ; HATPase_c 344-454
Cluster members and taxonomy
Representative gene: GCF_002865355#CDL25_RS15320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key