1 HAMP#1
40-107 aa · 68 aa · 19.4% of protein
Raw token
HAMP:40:0.00000000000000682:107:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS15005
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865355
ClassHKTypeClassicLength351 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865355#CDL25_RS15005Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length351 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 351 aa (70.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa351 aa
Domain-by-domain annotation3 items
2 HisKA#2
118-185 aa · 68 aa · 19.4% of protein
Raw token
HisKA:118:8.04e-16:185:68:643 HATPase_c#3
233-345 aa · 113 aa · 32.2% of protein
Raw token
HATPase_c:233:1.14e-33:345:113:109- Raw architecture: HAMP:40:0.00000000000000682:107:68:69#HisKA:118:8.04e-16:185:68:64#HATPase_c:233:1.14e-33:345:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865355::NZ_NIHR01000041.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6030-7770Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_14970RefSeq proteinWP_009245625.1
Context group ID
GCF_002865355::NZ_NIHR01000041.1::G00033Context members
CDL25_RS15005CDL25_RS15010
Partner locus tags
CDL25_RS15005CDL25_RS15010
Partner old locus tags
CDL25_14970CDL25_14975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009245625.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NE57Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NE57_MEDG5Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS15005Primary locus identifier stored in the genes table.
Old locus tagCDL25_14970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000041.1Sequence record reported by the local genomic context database.
Genomic interval6 030-7 085 nt1 056 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 030-7 770 ntGCF_002865355::NZ_NIHR01000041.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000041.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000041.1All displayed genes belong to this local TCS context.
Neighborhood span6 030-7 770 nt1 741 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 030 nt7 770 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL25_RS15005GCF_002865355#CDL25_RS15005
HKClassicCurrent focus
6 030-7 085 nt · Forward (+)
CDL25_RS15010GCF_002865355#CDL25_RS15010
RROmpR
7 078-7 770 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS12240Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2792580
Simplified PFAM architecture for HKOC_2792580
PFAM domain coverage: 229 / 351 aa (65.2%)
1 aa351 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[55-106] | HisKA[119-184] | HATPase_c[233-343]
- Domain count: 3
- Matched identifier: HKOC_2792580
- Positioned domains: HAMP 55-106 ; HisKA 119-184 ; HATPase_c 233-343
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS12240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key