1 HisKA#1
88-153 aa · 66 aa · 21.2% of protein
Raw token
HisKA:88:0.000000349:153:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS12995
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865355
ClassHKTypeClassicLength312 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865355#CDL25_RS12995Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length312 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 312 aa (55.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa312 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-305 aa · 106 aa · 34.0% of protein
Raw token
HATPase_c:200:2.38e-21:305:107:109- Raw architecture: HisKA:88:0.000000349:153:66:64#HATPase_c:200:2.38e-21:305:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865355::NZ_NIHR01000029.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14050-15653Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_12975RefSeq proteinWP_004844664.1
Context group ID
GCF_002865355::NZ_NIHR01000029.1::G00029Context members
CDL25_RS12995CDL25_RS13000
Partner locus tags
CDL25_RS12995CDL25_RS13000
Partner old locus tags
CDL25_12975CDL25_12980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004844664.1Primary protein accession used for annex mappings.
UniProt accessionA7B7Z3Primary UniProt accession resolved in the annex database.
UniProt IDA7B7Z3_MEDG7Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS12995Primary locus identifier stored in the genes table.
Old locus tagCDL25_12975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000029.1Sequence record reported by the local genomic context database.
Genomic interval14 050-14 988 nt939 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 050-15 653 ntGCF_002865355::NZ_NIHR01000029.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000029.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000029.1All displayed genes belong to this local TCS context.
Neighborhood span14 050-15 653 nt1 604 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 050 nt15 653 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL25_RS12995GCF_002865355#CDL25_RS12995
HKClassicCurrent focus
14 050-14 988 nt · Reverse (-)
CDL25_RS13000GCF_002865355#CDL25_RS13000
RROmpR
14 985-15 653 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS16235Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2875772
Simplified PFAM architecture for HKOC_2875772
PFAM domain coverage: 172 / 312 aa (55.1%)
1 aa312 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[88-153] | HATPase_c[200-305]
- Domain count: 2
- Matched identifier: HKOC_2875772
- Positioned domains: HisKA 88-153 ; HATPase_c 200-305
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS16235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key