1 HisKA#1
496-560 aa · 65 aa · 8.9% of protein
Raw token
HisKA:496:0.00000000000000664:560:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS11335
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865355
ClassHKTypeClassicLength727 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865355#CDL25_RS11335Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length727 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 727 aa (21.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa727 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
613-702 aa · 90 aa · 12.4% of protein
Raw token
HATPase_c:613:0.00000000000584:702:94:109- Raw architecture: HisKA:496:0.00000000000000664:560:65:64#HATPase_c:613:0.00000000000584:702:94:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865355::NZ_NIHR01000021.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span41058-43911Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_11315RefSeq proteinWP_009245662.1
Context group ID
GCF_002865355::NZ_NIHR01000021.1::G00023Context members
CDL25_RS11335CDL25_RS11340
Partner locus tags
CDL25_RS11335CDL25_RS11340
Partner old locus tags
CDL25_11315CDL25_11320
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009245662.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ3KMN0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ3KMN0_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS11335Primary locus identifier stored in the genes table.
Old locus tagCDL25_11315Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000021.1Sequence record reported by the local genomic context database.
Genomic interval41 058-43 241 nt2 184 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 058-43 911 ntGCF_002865355::NZ_NIHR01000021.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000021.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000021.1All displayed genes belong to this local TCS context.
Neighborhood span41 058-43 911 nt2 854 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 058 nt43 911 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL25_RS11335GCF_002865355#CDL25_RS11335
HKClassicCurrent focus
41 058-43 241 nt · Reverse (-)
CDL25_RS11340GCF_002865355#CDL25_RS11340
RROmpR
43 213-43 911 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS09630Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0719117
Simplified PFAM architecture for HKOC_0719117
PFAM domain coverage: 161 / 727 aa (22.1%)
1 aa727 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[496-560] | HATPase_c[608-703]
- Domain count: 2
- Matched identifier: HKOC_0719117
- Positioned domains: HisKA 496-560 ; HATPase_c 608-703
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS09630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key