1 Response_reg#1
3-103 aa · 101 aa · 49.0% of protein
Raw token
Response_reg:3:3.56e-27:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS11020
Response regulator NarL family
Mediterraneibacter gnavus · GCF_002865355
ClassRRTypeNarLLength206 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865355#CDL25_RS11020Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 206 aa (74.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-201 aa · 53 aa · 25.7% of protein
Raw token
HTH_LUXR:149:3.25e-22:201:53:58- Raw architecture: Response_reg:3:3.56e-27:103:101:111#HTH_LUXR:149:3.25e-22:201:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865355::NZ_NIHR01000020.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25918-27229Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_11000RefSeq proteinWP_009245039.1
Context group ID
GCF_002865355::NZ_NIHR01000020.1::G00020Context members
CDL25_RS11020CDL25_RS17545
Partner locus tags
CDL25_RS11020CDL25_RS17545
Partner old locus tags
CDL25_11000CDL25_11005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009245039.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q6F763Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q6F763_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS11020Primary locus identifier stored in the genes table.
Old locus tagCDL25_11000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000020.1Sequence record reported by the local genomic context database.
Genomic interval25 918-26 538 nt621 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span25 918-27 229 ntGCF_002865355::NZ_NIHR01000020.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000020.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000020.1All displayed genes belong to this local TCS context.
Neighborhood span25 918-27 229 nt1 312 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 918 nt27 229 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL25_RS11020GCF_002865355#CDL25_RS11020
RRNarLCurrent focus
25 918-26 538 nt · Reverse (-)
CDL25_RS17545GCF_002865355#CDL25_RS17545
HKClassic
26 543-27 229 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS11225Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2081636
Simplified PFAM architecture for RROC_2081636
PFAM domain coverage: 160 / 206 aa (77.7%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-109] | GerE[149-201]
- Domain count: 2
- Matched identifier: RROC_2081636
- Positioned domains: Response_reg 3-109 ; Response_reg 3-109 ; GerE 149-201 ; GerE 149-201
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS11225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key