1 HAMP#1
167-236 aa · 70 aa · 14.2% of protein
Raw token
HAMP:167:1.25e-16:236:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS10975
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865355
ClassHKTypeClassicLength494 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865355#CDL25_RS10975Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length494 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 494 aa (50.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa494 aa
Domain-by-domain annotation3 items
2 HisKA#2
261-328 aa · 68 aa · 13.8% of protein
Raw token
HisKA:261:0.0000000000000308:328:68:643 HATPase_c#3
373-481 aa · 109 aa · 22.1% of protein
Raw token
HATPase_c:373:2.51e-18:481:110:109- Raw architecture: HAMP:167:1.25e-16:236:70:69#HisKA:261:0.0000000000000308:328:68:64#HATPase_c:373:2.51e-18:481:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865355::NZ_NIHR01000020.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16220-18381Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_10955RefSeq proteinWP_004841387.1
Context group ID
GCF_002865355::NZ_NIHR01000020.1::G00019Context members
CDL25_RS10970CDL25_RS10975
Partner locus tags
CDL25_RS10970CDL25_RS10975
Partner old locus tags
CDL25_10950CDL25_10955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004841387.1Primary protein accession used for annex mappings.
UniProt accessionA7B061Primary UniProt accession resolved in the annex database.
UniProt IDA7B061_MEDG7Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS10975Primary locus identifier stored in the genes table.
Old locus tagCDL25_10955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000020.1Sequence record reported by the local genomic context database.
Genomic interval16 897-18 381 nt1 485 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 220-18 381 ntGCF_002865355::NZ_NIHR01000020.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000020.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000020.1All displayed genes belong to this local TCS context.
Neighborhood span16 220-18 381 nt2 162 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 220 nt18 381 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL25_RS10970GCF_002865355#CDL25_RS10970
RROmpR
16 220-16 897 nt · Forward (+)
CDL25_RS10975GCF_002865355#CDL25_RS10975
HKClassicCurrent focus
16 897-18 381 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS04090Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1509581
Simplified PFAM architecture for HKOC_1509581
PFAM domain coverage: 226 / 494 aa (45.7%)
1 aa494 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[184-235] | HisKA[261-326] | HATPase_c[374-481]
- Domain count: 3
- Matched identifier: HKOC_1509581
- Positioned domains: HAMP 184-235 ; HisKA 261-326 ; HATPase_c 374-481
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS04090
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key