1 Response_reg#1
4-117 aa · 114 aa · 32.0% of protein
Raw token
Response_reg:4:7.32e-29:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS10490
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_002865355
ClassRRTypeunclassifiedLength356 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865355#CDL25_RS10490Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length356 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage178 / 356 aa (50.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa356 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
259-288 aa · 30 aa · 8.4% of protein
Raw token
HTH_AraC:259:0.000000131:288:30:423 HTH_AraC#3
315-348 aa · 34 aa · 9.6% of protein
Raw token
HTH_AraC:315:0.0000505:348:34:42- Raw architecture: Response_reg:4:7.32e-29:117:114:111#HTH_AraC:259:0.000000131:288:30:42#HTH_AraC:315:0.0000505:348:34:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865355::NZ_NIHR01000018.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span48717-51526Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_10480RefSeq proteinWP_009244307.1
Context group ID
GCF_002865355::NZ_NIHR01000018.1::G00016Context members
CDL25_RS10485CDL25_RS10490
Partner locus tags
CDL25_RS10485CDL25_RS10490
Partner old locus tags
CDL25_10475CDL25_10480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009244307.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NLR9Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NLR9_MEDG5Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS10490Primary locus identifier stored in the genes table.
Old locus tagCDL25_10480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000018.1Sequence record reported by the local genomic context database.
Genomic interval50 456-51 526 nt1 071 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span48 717-51 526 ntGCF_002865355::NZ_NIHR01000018.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000018.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000018.1All displayed genes belong to this local TCS context.
Neighborhood span48 717-51 526 nt2 810 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 717 nt51 526 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL25_RS10485GCF_002865355#CDL25_RS10485
HKClassic
48 717-50 468 nt · Forward (+)
CDL25_RS10490GCF_002865355#CDL25_RS10490
RRunclassifiedCurrent focus
50 456-51 526 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS12300Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0466688
Simplified PFAM architecture for RROC_0466688
PFAM domain coverage: 192 / 356 aa (53.9%)
1 aa356 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[272-350]
- Domain count: 2
- Matched identifier: RROC_0466688
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 272-350 ; HTH_18 272-350
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS12300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key