1 HisKA#1
286-353 aa · 68 aa · 13.2% of protein
Raw token
HisKA:286:0.00000000000223:353:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS10280
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865355
ClassHKTypeClassicLength514 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865355#CDL25_RS10280Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length514 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 514 aa (35.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa514 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
397-509 aa · 113 aa · 22.0% of protein
Raw token
HATPase_c:397:9.69e-29:509:113:109- Raw architecture: HisKA:286:0.00000000000223:353:68:64#HATPase_c:397:9.69e-29:509:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865355::NZ_NIHR01000018.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6140-8381Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_10270RefSeq proteinWP_009244337.1
Context group ID
GCF_002865355::NZ_NIHR01000018.1::G00015Context members
CDL25_RS10280CDL25_RS10285
Partner locus tags
CDL25_RS10280CDL25_RS10285
Partner old locus tags
CDL25_10270CDL25_10275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009244337.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NTD3Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NTD3_MEDG5Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS10280Primary locus identifier stored in the genes table.
Old locus tagCDL25_10270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000018.1Sequence record reported by the local genomic context database.
Genomic interval6 140-7 684 nt1 545 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 140-8 381 ntGCF_002865355::NZ_NIHR01000018.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000018.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000018.1All displayed genes belong to this local TCS context.
Neighborhood span6 140-8 381 nt2 242 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 140 nt8 381 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL25_RS10280GCF_002865355#CDL25_RS10280
HKClassicCurrent focus
6 140-7 684 nt · Forward (+)
CDL25_RS10285GCF_002865355#CDL25_RS10285
RROmpR
7 677-8 381 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013303705#G5A17_RS08055Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1364494
Simplified PFAM architecture for HKOC_1364494
PFAM domain coverage: 286 / 528 aa (54.2%)
1 aa528 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[31-137] | HisKA[300-367] | HATPase_c[412-522]
- Domain count: 3
- Matched identifier: HKOC_1364494
- Positioned domains: DUF4118 31-137 ; HisKA 300-367 ; HATPase_c 412-522
Cluster members and taxonomy
Representative gene: GCF_013303705#G5A17_RS08055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key