1 HAMP#1
154-227 aa · 74 aa · 16.3% of protein
Raw token
HAMP:154:0.000000000000004:227:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS09505
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865355
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865355#CDL25_RS09505Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 454 aa (55.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-297 aa · 65 aa · 14.3% of protein
Raw token
HisKA:233:0.0000000000000279:297:65:643 HATPase_c#3
343-454 aa · 112 aa · 24.7% of protein
Raw token
HATPase_c:343:2.52e-28:454:112:109- Raw architecture: HAMP:154:0.000000000000004:227:74:69#HisKA:233:0.0000000000000279:297:65:64#HATPase_c:343:2.52e-28:454:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865355::NZ_NIHR01000016.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2849-4884Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_09495RefSeq proteinWP_101872330.1
Context group ID
GCF_002865355::NZ_NIHR01000016.1::G00012Context members
CDL25_RS09500CDL25_RS09505
Partner locus tags
CDL25_RS09500CDL25_RS09505
Partner old locus tags
CDL25_09490CDL25_09495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_101872330.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS09505Primary locus identifier stored in the genes table.
Old locus tagCDL25_09495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000016.1Sequence record reported by the local genomic context database.
Genomic interval3 520-4 884 nt1 365 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 849-4 884 ntGCF_002865355::NZ_NIHR01000016.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000016.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000016.1All displayed genes belong to this local TCS context.
Neighborhood span2 849-4 884 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 849 nt4 884 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL25_RS09500GCF_002865355#CDL25_RS09500
RROmpR
2 849-3 523 nt · Forward (+)
CDL25_RS09505GCF_002865355#CDL25_RS09505
HKClassicCurrent focus
3 520-4 884 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865355#CDL25_RS09505The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1914580
Simplified PFAM architecture for HKOC_1914580
PFAM domain coverage: 234 / 454 aa (51.5%)
1 aa454 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[171-227] | HisKA[232-297] | HATPase_c[343-453]
- Domain count: 3
- Matched identifier: HKOC_1914580
- Positioned domains: HAMP 171-227 ; HisKA 232-297 ; HATPase_c 343-453
Cluster members and taxonomy
Representative gene: GCF_002865355#CDL25_RS09505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key