1 Response_reg#1
4-116 aa · 113 aa · 21.2% of protein
Raw token
Response_reg:4:1.01e-27:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS08920
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_002865355
ClassRRTypeunclassifiedLength534 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865355#CDL25_RS08920Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage177 / 534 aa (33.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
448-482 aa · 35 aa · 6.6% of protein
Raw token
HTH_AraC:448:0.000000183:482:35:423 HTH_AraC#3
502-530 aa · 29 aa · 5.4% of protein
Raw token
HTH_AraC:502:0.00000147:530:29:42- Raw architecture: Response_reg:4:1.01e-27:116:113:111#HTH_AraC:448:0.000000183:482:35:42#HTH_AraC:502:0.00000147:530:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865355::NZ_NIHR01000014.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28218-31631Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_08910RefSeq proteinWP_009244981.1
Context group ID
GCF_002865355::NZ_NIHR01000014.1::G00008Context members
CDL25_RS08920CDL25_RS08925
Partner locus tags
CDL25_RS08920CDL25_RS08925
Partner old locus tags
CDL25_08910CDL25_08915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009244981.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NCY2Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NCY2_MEDG5Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS08920Primary locus identifier stored in the genes table.
Old locus tagCDL25_08910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000014.1Sequence record reported by the local genomic context database.
Genomic interval28 218-29 822 nt1 605 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 218-31 631 ntGCF_002865355::NZ_NIHR01000014.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000014.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000014.1All displayed genes belong to this local TCS context.
Neighborhood span28 218-31 631 nt3 414 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 218 nt31 631 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL25_RS08920GCF_002865355#CDL25_RS08920
RRunclassifiedCurrent focus
28 218-29 822 nt · Forward (+)
CDL25_RS08925GCF_002865355#CDL25_RS08925
HKClassic
29 826-31 631 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS04655Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0102889
Simplified PFAM architecture for RROC_0102889
PFAM domain coverage: 322 / 534 aa (60.3%)
1 aa534 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[170-300] | HTH_18[455-532]
- Domain count: 3
- Matched identifier: RROC_0102889
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GGDEF_2 170-300 ; GGDEF_2 170-300 ; HTH_18 455-532 ; HTH_18 455-532
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS04655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key