1 Response_reg#1
4-113 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:4:2.68e-35:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS08760
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_002865355
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865355#CDL25_RS08760Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 231 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:152:5.13e-31:228:77:77- Raw architecture: Response_reg:4:2.68e-35:113:111:111#Trans_reg_C:152:5.13e-31:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865355::NZ_NIHR01000013.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span68311-71623Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_08750RefSeq proteinWP_009244190.1
Context group ID
GCF_002865355::NZ_NIHR01000013.1::G00007Context members
CDL25_RS08760CDL25_RS08765
Partner locus tags
CDL25_RS08760CDL25_RS08765
Partner old locus tags
CDL25_08750CDL25_08755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009244190.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NRW0Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NRW0_MEDG5Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS08760Primary locus identifier stored in the genes table.
Old locus tagCDL25_08750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000013.1Sequence record reported by the local genomic context database.
Genomic interval68 311-69 006 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span68 311-71 623 ntGCF_002865355::NZ_NIHR01000013.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000013.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000013.1All displayed genes belong to this local TCS context.
Neighborhood span68 311-71 623 nt3 313 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 311 nt71 623 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL25_RS08760GCF_002865355#CDL25_RS08760
RROmpRCurrent focus
68 311-69 006 nt · Forward (+)
CDL25_RS08765GCF_002865355#CDL25_RS08765
HKClassic
69 020-71 623 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS13750Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1158272
Simplified PFAM architecture for RROC_1158272
PFAM domain coverage: 186 / 231 aa (80.5%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1158272
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS13750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key