1 Response_reg#1
6-117 aa · 112 aa · 48.3% of protein
Raw token
Response_reg:6:3.34e-36:117:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS06875
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_002865355
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865355#CDL25_RS06875Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 232 aa (81.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:155:3.29e-32:231:77:77- Raw architecture: Response_reg:6:3.34e-36:117:112:111#Trans_reg_C:155:3.29e-32:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865355::NZ_NIHR01000009.1::G00049
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span96406-97104Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_06865RefSeq proteinWP_101871985.1
Context group ID
GCF_002865355::NZ_NIHR01000009.1::G00049Context members
CDL25_RS06875
Partner locus tags
CDL25_RS06875
Partner old locus tags
CDL25_06865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101871985.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5P2R7Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5P2R7_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS06875Primary locus identifier stored in the genes table.
Old locus tagCDL25_06865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000009.1Sequence record reported by the local genomic context database.
Genomic interval96 406-97 104 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span96 406-97 104 ntGCF_002865355::NZ_NIHR01000009.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000009.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000009.1All displayed genes belong to this local TCS context.
Neighborhood span96 406-97 104 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 406 nt97 104 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDL25_RS06875GCF_002865355#CDL25_RS06875
RROmpRCurrent focus
96 406-97 104 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865355#CDL25_RS06875The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1127889
Simplified PFAM architecture for RROC_1127889
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-117] | Trans_reg_C[157-231]
- Domain count: 2
- Matched identifier: RROC_1127889
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; Trans_reg_C 157-231 ; Trans_reg_C 157-231
Cluster members and taxonomy
Representative gene: GCF_002865355#CDL25_RS06875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key