1 HisKA#1
90-145 aa · 56 aa · 17.8% of protein
Raw token
HisKA:90:0.0000000000000039:145:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS06850
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865355
ClassHKTypeClassicLength315 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865355#CDL25_RS06850Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length315 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 315 aa (54.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa315 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
192-306 aa · 115 aa · 36.5% of protein
Raw token
HATPase_c:192:2.52e-19:306:116:109- Raw architecture: HisKA:90:0.0000000000000039:145:56:64#HATPase_c:192:2.52e-19:306:116:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865355::NZ_NIHR01000009.1::G00048
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span92201-93148Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_06840RefSeq proteinWP_004843553.1
Context group ID
GCF_002865355::NZ_NIHR01000009.1::G00048Context members
CDL25_RS06850
Partner locus tags
CDL25_RS06850
Partner old locus tags
CDL25_06840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004843553.1Primary protein accession used for annex mappings.
UniProt accessionA7B4Z4Primary UniProt accession resolved in the annex database.
UniProt IDA7B4Z4_MEDG7Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS06850Primary locus identifier stored in the genes table.
Old locus tagCDL25_06840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000009.1Sequence record reported by the local genomic context database.
Genomic interval92 201-93 148 nt948 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span92 201-93 148 ntGCF_002865355::NZ_NIHR01000009.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000009.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000009.1All displayed genes belong to this local TCS context.
Neighborhood span92 201-93 148 nt948 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
92 201 nt93 148 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDL25_RS06850GCF_002865355#CDL25_RS06850
HKClassicCurrent focus
92 201-93 148 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS11550Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2873279
Simplified PFAM architecture for HKOC_2873279
PFAM domain coverage: 159 / 315 aa (50.5%)
1 aa315 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[88-145] | HATPase_c[192-292]
- Domain count: 2
- Matched identifier: HKOC_2873279
- Positioned domains: HisKA 88-145 ; HATPase_c 192-292
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS11550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key