1 HAMP#1
114-183 aa · 70 aa · 17.5% of protein
Raw token
HAMP:114:0.0000000126:183:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS04470
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865355
ClassHKTypeClassicLength400 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865355#CDL25_RS04470Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length400 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage220 / 400 aa (55.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa400 aa
Domain-by-domain annotation3 items
2 HisKA#2
194-256 aa · 63 aa · 15.8% of protein
Raw token
HisKA:194:0.00000000000734:256:63:643 HATPase_c#3
312-398 aa · 87 aa · 21.8% of protein
Raw token
HATPase_c:312:0.00000396:398:103:109- Raw architecture: HAMP:114:0.0000000126:183:70:69#HisKA:194:0.00000000000734:256:63:64#HATPase_c:312:0.00000396:398:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865355::NZ_NIHR01000005.1::G00039
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span113799-115001Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_04475RefSeq proteinWP_004844523.1
Context group ID
GCF_002865355::NZ_NIHR01000005.1::G00039Context members
CDL25_RS04470
Partner locus tags
CDL25_RS04470
Partner old locus tags
CDL25_04475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004844523.1Primary protein accession used for annex mappings.
UniProt accessionA7B7I5Primary UniProt accession resolved in the annex database.
UniProt IDA7B7I5_MEDG7Display identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS04470Primary locus identifier stored in the genes table.
Old locus tagCDL25_04475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000005.1Sequence record reported by the local genomic context database.
Genomic interval113 799-115 001 nt1 203 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span113 799-115 001 ntGCF_002865355::NZ_NIHR01000005.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000005.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span113 799-115 001 nt1 203 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 799 nt115 001 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDL25_RS04470GCF_002865355#CDL25_RS04470
HKClassicCurrent focus
113 799-115 001 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS15580Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2440593
Simplified PFAM architecture for HKOC_2440593
PFAM domain coverage: 103 / 400 aa (25.8%)
1 aa400 aa
HAMPHisKA
- Simplified architecture: HAMP + HisKA
- Raw architecture: HAMP[140-181] | HisKA[196-256]
- Domain count: 2
- Matched identifier: HKOC_2440593
- Positioned domains: HAMP 140-181 ; HisKA 196-256
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS15580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key