1 HisKA#1
88-150 aa · 63 aa · 20.7% of protein
Raw token
HisKA:88:0.0000000000976:150:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS04415
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865355
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865355#CDL25_RS04415Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 305 aa (54.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
202-305 aa · 104 aa · 34.1% of protein
Raw token
HATPase_c:202:1.28e-28:305:104:109- Raw architecture: HisKA:88:0.0000000000976:150:63:64#HATPase_c:202:1.28e-28:305:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865355::NZ_NIHR01000005.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span103679-105281Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_04420RefSeq proteinWP_004844536.1
Context group ID
GCF_002865355::NZ_NIHR01000005.1::G00038Context members
CDL25_RS04410CDL25_RS04415
Partner locus tags
CDL25_RS04410CDL25_RS04415
Partner old locus tags
CDL25_04415CDL25_04420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004844536.1Primary protein accession used for annex mappings.
UniProt accessionA7B7J8Primary UniProt accession resolved in the annex database.
UniProt IDA7B7J8_MEDG7Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS04415Primary locus identifier stored in the genes table.
Old locus tagCDL25_04420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000005.1Sequence record reported by the local genomic context database.
Genomic interval104 364-105 281 nt918 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span103 679-105 281 ntGCF_002865355::NZ_NIHR01000005.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000005.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span103 679-105 281 nt1 603 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 679 nt105 281 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL25_RS04410GCF_002865355#CDL25_RS04410
RROmpR
103 679-104 359 nt · Forward (+)
CDL25_RS04415GCF_002865355#CDL25_RS04415
HKClassicCurrent focus
104 364-105 281 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS15635Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882011
Simplified PFAM architecture for HKOC_2882011
PFAM domain coverage: 168 / 305 aa (55.1%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-149] | HATPase_c[200-304]
- Domain count: 2
- Matched identifier: HKOC_2882011
- Positioned domains: HisKA 87-149 ; HATPase_c 200-304
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS15635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key