1 Response_reg#1
4-113 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:4:1.97e-33:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS04410
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_002865355
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865355#CDL25_RS04410Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 226 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 33.2% of protein
Raw token
Trans_reg_C:144:3.35e-33:218:75:77- Raw architecture: Response_reg:4:1.97e-33:113:111:111#Trans_reg_C:144:3.35e-33:218:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865355::NZ_NIHR01000005.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span103679-105281Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_04415RefSeq proteinWP_004844537.1
Context group ID
GCF_002865355::NZ_NIHR01000005.1::G00038Context members
CDL25_RS04410CDL25_RS04415
Partner locus tags
CDL25_RS04410CDL25_RS04415
Partner old locus tags
CDL25_04415CDL25_04420
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004844537.1Primary protein accession used for annex mappings.
UniProt accessionA7B7J9Primary UniProt accession resolved in the annex database.
UniProt IDA7B7J9_MEDG7Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS04410Primary locus identifier stored in the genes table.
Old locus tagCDL25_04415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000005.1Sequence record reported by the local genomic context database.
Genomic interval103 679-104 359 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span103 679-105 281 ntGCF_002865355::NZ_NIHR01000005.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000005.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span103 679-105 281 nt1 603 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 679 nt105 281 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL25_RS04410GCF_002865355#CDL25_RS04410
RROmpRCurrent focus
103 679-104 359 nt · Forward (+)
CDL25_RS04415GCF_002865355#CDL25_RS04415
HKClassic
104 364-105 281 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS15640Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1408644
Simplified PFAM architecture for RROC_1408644
PFAM domain coverage: 186 / 226 aa (82.3%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[144-219]
- Domain count: 2
- Matched identifier: RROC_1408644
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 144-219 ; Trans_reg_C 144-219
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS15640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key