1 Response_reg#1
4-108 aa · 105 aa · 44.1% of protein
Raw token
Response_reg:4:1.97e-16:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL25_RS04070
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_002865355
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865355#CDL25_RS04070Stable P2CS identifier used across views.
GenomeGCF_002865355Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 238 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-229 aa · 92 aa · 38.7% of protein
Raw token
LytTR:138:2.33e-18:229:97:98- Raw architecture: Response_reg:4:1.97e-16:108:108:111#LytTR:138:2.33e-18:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865355::NZ_NIHR01000005.1::G00037
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span29962-30678Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL25_04080RefSeq proteinWP_023923766.1
Context group ID
GCF_002865355::NZ_NIHR01000005.1::G00037Context members
CDL25_RS04070
Partner locus tags
CDL25_RS04070
Partner old locus tags
CDL25_04080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_023923766.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NZ52Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NZ52_MEDG5Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL25_RS04070Primary locus identifier stored in the genes table.
Old locus tagCDL25_04080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHR01000005.1Sequence record reported by the local genomic context database.
Genomic interval29 962-30 678 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span29 962-30 678 ntGCF_002865355::NZ_NIHR01000005.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865355::NZ_NIHR01000005.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHR01000005.1All displayed genes belong to this local TCS context.
Neighborhood span29 962-30 678 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 962 nt30 678 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDL25_RS04070GCF_002865355#CDL25_RS04070
RRLytTRCurrent focus
29 962-30 678 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS15980Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932676
Simplified PFAM architecture for RROC_0932676
PFAM domain coverage: 194 / 238 aa (81.5%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[141-229]
- Domain count: 2
- Matched identifier: RROC_0932676
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; LytTR 141-229 ; LytTR 141-229
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS15980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865355
AssemblyASM286535v1 · Scaffoldhaploid
Genome composition3 415 781 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 39 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key