1 Response_reg#1
6-115 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:6:2.4e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL23_RS03715
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_002865345
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865345#CDL23_RS03715Stable P2CS identifier used across views.
GenomeGCF_002865345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 235 aa (80.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-231 aa · 78 aa · 33.2% of protein
Raw token
Trans_reg_C:154:3.32e-30:231:78:77- Raw architecture: Response_reg:6:2.4e-36:115:111:111#Trans_reg_C:154:3.32e-30:231:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865345::NZ_NIHT01000004.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span118638-120597Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL23_03700RefSeq proteinWP_022038510.1
Context group ID
GCF_002865345::NZ_NIHT01000004.1::G00032Context members
CDL23_RS03710CDL23_RS03715
Partner locus tags
CDL23_RS03710CDL23_RS03715
Partner old locus tags
CDL23_03695CDL23_03700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022038510.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5PNY4Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5PNY4_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL23_RS03715Primary locus identifier stored in the genes table.
Old locus tagCDL23_03700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHT01000004.1Sequence record reported by the local genomic context database.
Genomic interval119 890-120 597 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span118 638-120 597 ntGCF_002865345::NZ_NIHT01000004.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865345::NZ_NIHT01000004.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHT01000004.1All displayed genes belong to this local TCS context.
Neighborhood span118 638-120 597 nt1 960 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
118 638 nt120 597 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL23_RS03710GCF_002865345#CDL23_RS03710
HKClassic
118 638-119 918 nt · Reverse (-)
CDL23_RS03715GCF_002865345#CDL23_RS03715
RROmpRCurrent focus
119 890-120 597 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865345#CDL23_RS03715The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1023331
Simplified PFAM architecture for RROC_1023331
PFAM domain coverage: 188 / 235 aa (80.0%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-231]
- Domain count: 2
- Matched identifier: RROC_1023331
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-231 ; Trans_reg_C 154-231
Cluster members and taxonomy
Representative gene: GCF_002865345#CDL23_RS03715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865345
AssemblyASM286534v1 · Scaffoldhaploid
Genome composition3 271 201 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 81 · HK 38 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key