1 HisKA#1
198-262 aa · 65 aa · 15.4% of protein
Raw token
HisKA:198:0.000000000000013:262:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL26_RS03905
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865325
ClassHKTypeClassicLength421 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865325#CDL26_RS03905Stable P2CS identifier used across views.
GenomeGCF_002865325Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 421 aa (37.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa421 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-402 aa · 94 aa · 22.3% of protein
Raw token
HATPase_c:309:0.00000000000000592:402:95:109- Raw architecture: HisKA:198:0.000000000000013:262:65:64#HATPase_c:309:0.00000000000000592:402:95:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865325::NZ_NIHS01000004.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span130381-132325Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL26_03880RefSeq proteinWP_101870238.1
Context group ID
GCF_002865325::NZ_NIHS01000004.1::G00038Context members
CDL26_RS03905CDL26_RS03910
Partner locus tags
CDL26_RS03905CDL26_RS03910
Partner old locus tags
CDL26_03880CDL26_03885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101870238.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5PGI0Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5PGI0_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL26_RS03905Primary locus identifier stored in the genes table.
Old locus tagCDL26_03880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHS01000004.1Sequence record reported by the local genomic context database.
Genomic interval130 381-131 646 nt1 266 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span130 381-132 325 ntGCF_002865325::NZ_NIHS01000004.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865325::NZ_NIHS01000004.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHS01000004.1All displayed genes belong to this local TCS context.
Neighborhood span130 381-132 325 nt1 945 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
130 381 nt132 325 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL26_RS03905GCF_002865325#CDL26_RS03905
HKClassicCurrent focus
130 381-131 646 nt · Reverse (-)
CDL26_RS03910GCF_002865325#CDL26_RS03910
RROmpR
131 618-132 325 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865325#CDL26_RS03905The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2258198
Simplified PFAM architecture for HKOC_2258198
PFAM domain coverage: 156 / 421 aa (37.1%)
1 aa421 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[199-262] | HATPase_c[311-402]
- Domain count: 2
- Matched identifier: HKOC_2258198
- Positioned domains: HisKA 199-262 ; HATPase_c 311-402
Cluster members and taxonomy
Representative gene: GCF_002865325#CDL26_RS03905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865325
AssemblyASM286532v1 · Scaffoldhaploid
Genome composition3 497 293 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 90 · HK 43 · RR 47CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key