1 HAMP#1
288-357 aa · 70 aa · 12.0% of protein
Raw token
HAMP:288:0.00000000224:357:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL24_RS08785
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865305
ClassHKTypeClassicLength583 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865305#CDL24_RS08785Stable P2CS identifier used across views.
GenomeGCF_002865305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length583 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 583 aa (43.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa583 aa
Domain-by-domain annotation3 items
2 His_kinase#2
372-452 aa · 81 aa · 13.9% of protein
Raw token
His_kinase:372:3.88e-22:452:81:803 HATPase_c#3
475-575 aa · 101 aa · 17.3% of protein
Raw token
HATPase_c:475:0.000000000000118:575:105:109- Raw architecture: HAMP:288:0.00000000224:357:70:69#His_kinase:372:3.88e-22:452:81:80#HATPase_c:475:0.000000000000118:575:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865305::NZ_NIHU01000012.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17764-20573Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL24_08780RefSeq proteinWP_101875032.1
Context group ID
GCF_002865305::NZ_NIHU01000012.1::G00009Context members
CDL24_RS08780CDL24_RS08785
Partner locus tags
CDL24_RS08780CDL24_RS08785
Partner old locus tags
CDL24_08775CDL24_08780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_101875032.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL24_RS08785Primary locus identifier stored in the genes table.
Old locus tagCDL24_08780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHU01000012.1Sequence record reported by the local genomic context database.
Genomic interval18 822-20 573 nt1 752 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 764-20 573 ntGCF_002865305::NZ_NIHU01000012.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865305::NZ_NIHU01000012.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHU01000012.1All displayed genes belong to this local TCS context.
Neighborhood span17 764-20 573 nt2 810 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 764 nt20 573 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL24_RS08780GCF_002865305#CDL24_RS08780
RRunclassified
17 764-18 834 nt · Reverse (-)
CDL24_RS08785GCF_002865305#CDL24_RS08785
HKClassicCurrent focus
18 822-20 573 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865305#CDL24_RS08785The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1148272
Simplified PFAM architecture for HKOC_1148272
PFAM domain coverage: 183 / 583 aa (31.4%)
1 aa583 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[372-451] | HATPase_c[472-574]
- Domain count: 2
- Matched identifier: HKOC_1148272
- Positioned domains: His_kinase 372-451 ; HATPase_c 472-574
Cluster members and taxonomy
Representative gene: GCF_002865305#CDL24_RS08785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865305
AssemblyASM286530v1 · Scaffoldhaploid
Genome composition3 078 886 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 80 · HK 38 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key