1 Response_reg#1
3-113 aa · 111 aa · 49.6% of protein
Raw token
Response_reg:3:1.14e-38:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL24_RS06065
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_002865305
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865305#CDL24_RS06065Stable P2CS identifier used across views.
GenomeGCF_002865305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 224 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:145:1.52e-31:220:77:77- Raw architecture: Response_reg:3:1.14e-38:113:111:111#Trans_reg_C:145:1.52e-31:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865305::NZ_NIHU01000007.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119758-121793Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL24_06060RefSeq proteinWP_101874753.1
Context group ID
GCF_002865305::NZ_NIHU01000007.1::G00037Context members
CDL24_RS06060CDL24_RS06065
Partner locus tags
CDL24_RS06060CDL24_RS06065
Partner old locus tags
CDL24_06055CDL24_06060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101874753.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5PZE7Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5PZE7_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL24_RS06065Primary locus identifier stored in the genes table.
Old locus tagCDL24_06060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHU01000007.1Sequence record reported by the local genomic context database.
Genomic interval121 119-121 793 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span119 758-121 793 ntGCF_002865305::NZ_NIHU01000007.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865305::NZ_NIHU01000007.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHU01000007.1All displayed genes belong to this local TCS context.
Neighborhood span119 758-121 793 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 758 nt121 793 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL24_RS06060GCF_002865305#CDL24_RS06060
HKClassic
119 758-121 122 nt · Reverse (-)
CDL24_RS06065GCF_002865305#CDL24_RS06065
RROmpRCurrent focus
121 119-121 793 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865285#CDL20_RS09165Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1541061
Simplified PFAM architecture for RROC_1541061
PFAM domain coverage: 187 / 224 aa (83.5%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[145-220]
- Domain count: 2
- Matched identifier: RROC_1541061
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 145-220 ; Trans_reg_C 145-220
Cluster members and taxonomy
Representative gene: GCF_002865285#CDL20_RS09165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865305
AssemblyASM286530v1 · Scaffoldhaploid
Genome composition3 078 886 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 80 · HK 38 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key