1 Response_reg#1
4-117 aa · 114 aa · 21.3% of protein
Raw token
Response_reg:4:8.34e-23:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL24_RS05565
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_002865305
ClassRRTypeunclassifiedLength536 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865305#CDL24_RS05565Stable P2CS identifier used across views.
GenomeGCF_002865305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length536 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 536 aa (28.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa536 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
492-527 aa · 36 aa · 6.7% of protein
Raw token
HTH_AraC:492:0.00000000196:527:36:42- Raw architecture: Response_reg:4:8.34e-23:117:114:111#HTH_AraC:492:0.00000000196:527:36:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865305::NZ_NIHU01000007.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39935-43389Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL24_05560RefSeq proteinWP_101874807.1
Context group ID
GCF_002865305::NZ_NIHU01000007.1::G00036Context members
CDL24_RS05560CDL24_RS05565
Partner locus tags
CDL24_RS05560CDL24_RS05565
Partner old locus tags
CDL24_05555CDL24_05560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101874807.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q6AMB6Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q6AMB6_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL24_RS05565Primary locus identifier stored in the genes table.
Old locus tagCDL24_05560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHU01000007.1Sequence record reported by the local genomic context database.
Genomic interval41 779-43 389 nt1 611 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span39 935-43 389 ntGCF_002865305::NZ_NIHU01000007.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865305::NZ_NIHU01000007.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHU01000007.1All displayed genes belong to this local TCS context.
Neighborhood span39 935-43 389 nt3 455 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 935 nt43 389 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL24_RS05560GCF_002865305#CDL24_RS05560
HKClassic
39 935-41 743 nt · Forward (+)
CDL24_RS05565GCF_002865305#CDL24_RS05565
RRunclassifiedCurrent focus
41 779-43 389 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865305#CDL24_RS05565The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0098772
Simplified PFAM architecture for RROC_0098772
PFAM domain coverage: 325 / 536 aa (60.6%)
1 aa536 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[158-290] | HTH_18[450-528]
- Domain count: 3
- Matched identifier: RROC_0098772
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GGDEF_2 158-290 ; GGDEF_2 158-290 ; HTH_18 450-528 ; HTH_18 450-528
Cluster members and taxonomy
Representative gene: GCF_002865305#CDL24_RS05565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865305
AssemblyASM286530v1 · Scaffoldhaploid
Genome composition3 078 886 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 80 · HK 38 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key