1 HisKA#1
90-141 aa · 52 aa · 16.8% of protein
Raw token
HisKA:90:0.00000000000011:141:52:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL24_RS04820
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865305
ClassHKTypeClassicLength309 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865305#CDL24_RS04820Stable P2CS identifier used across views.
GenomeGCF_002865305Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length309 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 309 aa (55.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa309 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
192-309 aa · 118 aa · 38.2% of protein
Raw token
HATPase_c:192:1.61e-18:309:119:109- Raw architecture: HisKA:90:0.00000000000011:141:52:64#HATPase_c:192:1.61e-18:309:119:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865305::NZ_NIHU01000006.1::G00034
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span44415-45344Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL24_04815RefSeq proteinWP_101874719.1
Context group ID
GCF_002865305::NZ_NIHU01000006.1::G00034Context members
CDL24_RS04820
Partner locus tags
CDL24_RS04820
Partner old locus tags
CDL24_04815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101874719.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q4EZI6Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q4EZI6_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL24_RS04820Primary locus identifier stored in the genes table.
Old locus tagCDL24_04815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHU01000006.1Sequence record reported by the local genomic context database.
Genomic interval44 415-45 344 nt930 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 415-45 344 ntGCF_002865305::NZ_NIHU01000006.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865305::NZ_NIHU01000006.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHU01000006.1All displayed genes belong to this local TCS context.
Neighborhood span44 415-45 344 nt930 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 415 nt45 344 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDL24_RS04820GCF_002865305#CDL24_RS04820
HKClassicCurrent focus
44 415-45 344 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865305#CDL24_RS04820The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2879405
Simplified PFAM architecture for HKOC_2879405
PFAM domain coverage: 171 / 309 aa (55.3%)
1 aa309 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[88-143] | HATPase_c[192-306]
- Domain count: 2
- Matched identifier: HKOC_2879405
- Positioned domains: HisKA 88-143 ; HATPase_c 192-306
Cluster members and taxonomy
Representative gene: GCF_002865305#CDL24_RS04820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865305
AssemblyASM286530v1 · Scaffoldhaploid
Genome composition3 078 886 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 80 · HK 38 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key