1 HAMP#1
292-368 aa · 77 aa · 12.8% of protein
Raw token
HAMP:292:0.00000233:368:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL20_RS13815
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865285
ClassHKTypeClassicLength603 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865285#CDL20_RS13815Stable P2CS identifier used across views.
GenomeGCF_002865285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length603 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage217 / 603 aa (36.0%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa603 aa
Domain-by-domain annotation3 items
2 His_kinase#2
383-460 aa · 78 aa · 12.9% of protein
Raw token
His_kinase:383:4.78e-27:460:78:803 HATPase_c#3
482-543 aa · 62 aa · 10.3% of protein
Raw token
HATPase_c:482:0.000000444:543:62:109- Raw architecture: HAMP:292:0.00000233:368:79:69#His_kinase:383:4.78e-27:460:78:80#HATPase_c:482:0.000000444:543:62:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865285::NZ_NIHW01000045.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span17864-19675Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL20_13760RefSeq proteinWP_101882943.1
Context group ID
GCF_002865285::NZ_NIHW01000045.1::G00038Context members
CDL20_RS13815
Partner locus tags
CDL20_RS13815
Partner old locus tags
CDL20_13760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101882943.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5PWV7Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5PWV7_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL20_RS13815Primary locus identifier stored in the genes table.
Old locus tagCDL20_13760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHW01000045.1Sequence record reported by the local genomic context database.
Genomic interval17 864-19 675 nt1 812 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 864-19 675 ntGCF_002865285::NZ_NIHW01000045.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865285::NZ_NIHW01000045.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHW01000045.1All displayed genes belong to this local TCS context.
Neighborhood span17 864-19 675 nt1 812 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 864 nt19 675 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDL20_RS13815GCF_002865285#CDL20_RS13815
HKClassicCurrent focus
17 864-19 675 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865285#CDL20_RS13815The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1038093
Simplified PFAM architecture for HKOC_1038093
PFAM domain coverage: 138 / 603 aa (22.9%)
1 aa603 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[383-461] | HATPase_c[481-539]
- Domain count: 2
- Matched identifier: HKOC_1038093
- Positioned domains: His_kinase 383-461 ; HATPase_c 481-539
Cluster members and taxonomy
Representative gene: GCF_002865285#CDL20_RS13815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865285
AssemblyASM286528v1 · Scaffoldhaploid
Genome composition3 072 153 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 74 · HK 37 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key