1 HAMP#1
305-374 aa · 70 aa · 11.6% of protein
Raw token
HAMP:305:0.00000000291:374:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL20_RS12395
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865285
ClassHKTypeClassicLength601 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865285#CDL20_RS12395Stable P2CS identifier used across views.
GenomeGCF_002865285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length601 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage206 / 601 aa (34.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa601 aa
Domain-by-domain annotation3 items
2 His_kinase#2
390-469 aa · 80 aa · 13.3% of protein
Raw token
His_kinase:390:1.42e-21:469:80:803 HATPase_c#3
488-543 aa · 56 aa · 9.3% of protein
Raw token
HATPase_c:488:0.0000024:543:56:109- Raw architecture: HAMP:305:0.00000000291:374:70:69#His_kinase:390:1.42e-21:469:80:80#HATPase_c:488:0.0000024:543:56:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865285::NZ_NIHW01000035.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6621-9949Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL20_12355RefSeq proteinWP_101882829.1
Context group ID
GCF_002865285::NZ_NIHW01000035.1::G00031Context members
CDL20_RS12395CDL20_RS12400
Partner locus tags
CDL20_RS12395CDL20_RS12400
Partner old locus tags
CDL20_12355CDL20_12360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101882829.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5PXJ3Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5PXJ3_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL20_RS12395Primary locus identifier stored in the genes table.
Old locus tagCDL20_12355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHW01000035.1Sequence record reported by the local genomic context database.
Genomic interval6 621-8 426 nt1 806 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 621-9 949 ntGCF_002865285::NZ_NIHW01000035.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865285::NZ_NIHW01000035.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHW01000035.1All displayed genes belong to this local TCS context.
Neighborhood span6 621-9 949 nt3 329 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 621 nt9 949 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL20_RS12395GCF_002865285#CDL20_RS12395
HKClassicCurrent focus
6 621-8 426 nt · Forward (+)
CDL20_RS12400GCF_002865285#CDL20_RS12400
RRunclassified
8 423-9 949 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865285#CDL20_RS12395The current gene is the representative for this cluster.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1048517
Simplified PFAM architecture for HKOC_1048517
PFAM domain coverage: 80 / 601 aa (13.3%)
1 aa601 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[390-469]
- Domain count: 1
- Matched identifier: HKOC_1048517
- Positioned domains: His_kinase 390-469
Cluster members and taxonomy
Representative gene: GCF_002865285#CDL20_RS12395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865285
AssemblyASM286528v1 · Scaffoldhaploid
Genome composition3 072 153 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 74 · HK 37 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key