1 HisKA#1
197-260 aa · 64 aa · 15.2% of protein
Raw token
HisKA:197:0.0000000691:260:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL20_RS09795
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865285
ClassHKTypeClassicLength421 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865285#CDL20_RS09795Stable P2CS identifier used across views.
GenomeGCF_002865285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 421 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa421 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-418 aa · 110 aa · 26.1% of protein
Raw token
HATPase_c:309:1.96e-30:418:110:109- Raw architecture: HisKA:197:0.0000000691:260:64:64#HATPase_c:309:1.96e-30:418:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865285::NZ_NIHW01000024.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4598-6528Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL20_09775RefSeq proteinWP_101882594.1
Context group ID
GCF_002865285::NZ_NIHW01000024.1::G00024Context members
CDL20_RS09795CDL20_RS09800
Partner locus tags
CDL20_RS09795CDL20_RS09800
Partner old locus tags
CDL20_09775CDL20_09780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101882594.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5PYY8Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5PYY8_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL20_RS09795Primary locus identifier stored in the genes table.
Old locus tagCDL20_09775Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHW01000024.1Sequence record reported by the local genomic context database.
Genomic interval4 598-5 863 nt1 266 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 598-6 528 ntGCF_002865285::NZ_NIHW01000024.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865285::NZ_NIHW01000024.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHW01000024.1All displayed genes belong to this local TCS context.
Neighborhood span4 598-6 528 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 598 nt6 528 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL20_RS09795GCF_002865285#CDL20_RS09795
HKClassicCurrent focus
4 598-5 863 nt · Reverse (-)
CDL20_RS09800GCF_002865285#CDL20_RS09800
RROmpR
5 839-6 528 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865285#CDL20_RS09795The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2258196
Simplified PFAM architecture for HKOC_2258196
PFAM domain coverage: 175 / 421 aa (41.6%)
1 aa421 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[197-260] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2258196
- Positioned domains: HisKA 197-260 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_002865285#CDL20_RS09795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865285
AssemblyASM286528v1 · Scaffoldhaploid
Genome composition3 072 153 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 74 · HK 37 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key