1 HAMP#1
301-370 aa · 70 aa · 11.6% of protein
Raw token
HAMP:301:0.0000000000498:370:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL20_RS08810
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865285
ClassHKTypeClassicLength606 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865285#CDL20_RS08810Stable P2CS identifier used across views.
GenomeGCF_002865285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length606 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 606 aa (42.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa606 aa
Domain-by-domain annotation3 items
2 His_kinase#2
386-464 aa · 79 aa · 13.0% of protein
Raw token
His_kinase:386:6.32e-30:464:79:803 HATPase_c#3
481-588 aa · 108 aa · 17.8% of protein
Raw token
HATPase_c:481:0.0000000000186:588:110:109- Raw architecture: HAMP:301:0.0000000000498:370:70:69#His_kinase:386:6.32e-30:464:79:80#HATPase_c:481:0.0000000000186:588:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865285::NZ_NIHW01000020.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17737-21142Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL20_08790RefSeq proteinWP_101882510.1
Context group ID
GCF_002865285::NZ_NIHW01000020.1::G00020Context members
CDL20_RS08805CDL20_RS08810
Partner locus tags
CDL20_RS08805CDL20_RS08810
Partner old locus tags
CDL20_08785CDL20_08790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101882510.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5PZF2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5PZF2_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL20_RS08810Primary locus identifier stored in the genes table.
Old locus tagCDL20_08790Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHW01000020.1Sequence record reported by the local genomic context database.
Genomic interval19 322-21 142 nt1 821 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 737-21 142 ntGCF_002865285::NZ_NIHW01000020.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865285::NZ_NIHW01000020.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHW01000020.1All displayed genes belong to this local TCS context.
Neighborhood span17 737-21 142 nt3 406 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 737 nt21 142 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL20_RS08805GCF_002865285#CDL20_RS08805
RRunclassified
17 737-19 347 nt · Reverse (-)
CDL20_RS08810GCF_002865285#CDL20_RS08810
HKClassicCurrent focus
19 322-21 142 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865285#CDL20_RS08810The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1024312
Simplified PFAM architecture for HKOC_1024312
PFAM domain coverage: 234 / 606 aa (38.6%)
1 aa606 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[319-369] | His_kinase[386-462] | HATPase_c[483-588]
- Domain count: 3
- Matched identifier: HKOC_1024312
- Positioned domains: HAMP 319-369 ; His_kinase 386-462 ; HATPase_c 483-588
Cluster members and taxonomy
Representative gene: GCF_002865285#CDL20_RS08810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865285
AssemblyASM286528v1 · Scaffoldhaploid
Genome composition3 072 153 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 74 · HK 37 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key