1 Response_reg#1
10-119 aa · 110 aa · 26.0% of protein
Raw token
Response_reg:10:2.84e-22:119:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL20_RS08205
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_002865285
ClassRRTypeunclassifiedLength423 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865285#CDL20_RS08205Stable P2CS identifier used across views.
GenomeGCF_002865285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length423 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 423 aa (26.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa423 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:10:2.84e-22:119:110:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865285::NZ_NIHW01000018.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span73-1344Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL20_08190RefSeq proteinWP_101882457.1
Context group ID
GCF_002865285::NZ_NIHW01000018.1::G00015Context members
CDL20_RS08205
Partner locus tags
CDL20_RS08205
Partner old locus tags
CDL20_08190
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101882457.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5PZP3Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5PZP3_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL20_RS08205Primary locus identifier stored in the genes table.
Old locus tagCDL20_08190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHW01000018.1Sequence record reported by the local genomic context database.
Genomic interval73-1 344 nt1 272 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73-1 344 ntGCF_002865285::NZ_NIHW01000018.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865285::NZ_NIHW01000018.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHW01000018.1All displayed genes belong to this local TCS context.
Neighborhood span73-1 344 nt1 272 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 nt1 344 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDL20_RS08205GCF_002865285#CDL20_RS08205
RRunclassifiedCurrent focus
73-1 344 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_964241225#ACESW5_RS09610Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0158945
Simplified PFAM architecture for RROC_0158945
PFAM domain coverage: 185 / 500 aa (37.0%)
1 aa500 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[10-119] | HTH_AraC[408-449] | HTH_AraC[468-500]
- Domain count: 3
- Matched identifier: RROC_0158945
- Positioned domains: Response_reg 10-119 ; HTH_AraC 408-449 ; HTH_AraC 468-500
Cluster members and taxonomy
Representative gene: GCF_964241225#ACESW5_RS09610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865285
AssemblyASM286528v1 · Scaffoldhaploid
Genome composition3 072 153 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 74 · HK 37 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key