1 Response_reg#1
4-116 aa · 113 aa · 21.2% of protein
Raw token
Response_reg:4:1.02e-27:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL20_RS07480
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_002865285
ClassRRTypeunclassifiedLength534 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865285#CDL20_RS07480Stable P2CS identifier used across views.
GenomeGCF_002865285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage177 / 534 aa (33.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
448-482 aa · 35 aa · 6.6% of protein
Raw token
HTH_AraC:448:0.000000183:482:35:423 HTH_AraC#3
502-530 aa · 29 aa · 5.4% of protein
Raw token
HTH_AraC:502:0.00000147:530:29:42- Raw architecture: Response_reg:4:1.02e-27:116:113:111#HTH_AraC:448:0.000000183:482:35:42#HTH_AraC:502:0.00000147:530:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865285::NZ_NIHW01000015.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span43767-47180Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL20_07465RefSeq proteinWP_101874907.1
Context group ID
GCF_002865285::NZ_NIHW01000015.1::G00013Context members
CDL20_RS07475CDL20_RS07480
Partner locus tags
CDL20_RS07475CDL20_RS07480
Partner old locus tags
CDL20_07460CDL20_07465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101874907.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5Q0B9Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5Q0B9_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 2Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL20_RS07480Primary locus identifier stored in the genes table.
Old locus tagCDL20_07465Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHW01000015.1Sequence record reported by the local genomic context database.
Genomic interval45 576-47 180 nt1 605 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span43 767-47 180 ntGCF_002865285::NZ_NIHW01000015.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865285::NZ_NIHW01000015.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHW01000015.1All displayed genes belong to this local TCS context.
Neighborhood span43 767-47 180 nt3 414 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
43 767 nt47 180 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL20_RS07475GCF_002865285#CDL20_RS07475
HKClassic
43 767-45 572 nt · Reverse (-)
CDL20_RS07480GCF_002865285#CDL20_RS07480
RRunclassifiedCurrent focus
45 576-47 180 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865285#CDL20_RS07480The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0103486
Simplified PFAM architecture for RROC_0103486
PFAM domain coverage: 322 / 534 aa (60.3%)
1 aa534 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[170-300] | HTH_18[455-532]
- Domain count: 3
- Matched identifier: RROC_0103486
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GGDEF_2 170-300 ; GGDEF_2 170-300 ; HTH_18 455-532 ; HTH_18 455-532
Cluster members and taxonomy
Representative gene: GCF_002865285#CDL20_RS07480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865285
AssemblyASM286528v1 · Scaffoldhaploid
Genome composition3 072 153 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 74 · HK 37 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key