1 Response_reg#1
4-119 aa · 116 aa · 47.5% of protein
Raw token
Response_reg:4:0.0000000000000541:119:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL20_RS06825
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_002865285
ClassRRTypeLytTRLength244 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865285#CDL20_RS06825Stable P2CS identifier used across views.
GenomeGCF_002865285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 244 aa (75.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-209 aa · 67 aa · 27.5% of protein
Raw token
LytTR:143:0.00000000000000144:209:67:98- Raw architecture: Response_reg:4:0.0000000000000541:119:118:111#LytTR:143:0.00000000000000144:209:67:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865285::NZ_NIHW01000013.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span67972-68706Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL20_06810RefSeq proteinWP_101882330.1
Context group ID
GCF_002865285::NZ_NIHW01000013.1::G00009Context members
CDL20_RS06825
Partner locus tags
CDL20_RS06825
Partner old locus tags
CDL20_06810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101882330.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5Q0N6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5Q0N6_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL20_RS06825Primary locus identifier stored in the genes table.
Old locus tagCDL20_06810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHW01000013.1Sequence record reported by the local genomic context database.
Genomic interval67 972-68 706 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span67 972-68 706 ntGCF_002865285::NZ_NIHW01000013.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865285::NZ_NIHW01000013.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHW01000013.1All displayed genes belong to this local TCS context.
Neighborhood span67 972-68 706 nt735 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
67 972 nt68 706 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDL20_RS06825GCF_002865285#CDL20_RS06825
RRLytTRCurrent focus
67 972-68 706 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865285#CDL20_RS06825The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0809835
Simplified PFAM architecture for RROC_0809835
PFAM domain coverage: 204 / 244 aa (83.6%)
1 aa244 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[144-231]
- Domain count: 2
- Matched identifier: RROC_0809835
- Positioned domains: Response_reg 4-119 ; Response_reg 4-119 ; LytTR 144-231 ; LytTR 144-231
Cluster members and taxonomy
Representative gene: GCF_002865285#CDL20_RS06825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865285
AssemblyASM286528v1 · Scaffoldhaploid
Genome composition3 072 153 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 74 · HK 37 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key