1 HisKA#1
497-561 aa · 65 aa · 8.9% of protein
Raw token
HisKA:497:0.00000000000000654:561:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL20_RS06765
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865285
ClassHKTypeClassicLength728 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865285#CDL20_RS06765Stable P2CS identifier used across views.
GenomeGCF_002865285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length728 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 728 aa (21.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa728 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
614-703 aa · 90 aa · 12.4% of protein
Raw token
HATPase_c:614:0.00000000000589:703:94:109- Raw architecture: HisKA:497:0.00000000000000654:561:65:64#HATPase_c:614:0.00000000000589:703:94:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865285::NZ_NIHW01000013.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54981-57837Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL20_06750RefSeq proteinWP_101882325.1
Context group ID
GCF_002865285::NZ_NIHW01000013.1::G00008Context members
CDL20_RS06765CDL20_RS06770
Partner locus tags
CDL20_RS06765CDL20_RS06770
Partner old locus tags
CDL20_06750CDL20_06755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101882325.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5Q0M6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5Q0M6_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL20_RS06765Primary locus identifier stored in the genes table.
Old locus tagCDL20_06750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHW01000013.1Sequence record reported by the local genomic context database.
Genomic interval54 981-57 167 nt2 187 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span54 981-57 837 ntGCF_002865285::NZ_NIHW01000013.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865285::NZ_NIHW01000013.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHW01000013.1All displayed genes belong to this local TCS context.
Neighborhood span54 981-57 837 nt2 857 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 981 nt57 837 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL20_RS06765GCF_002865285#CDL20_RS06765
HKClassicCurrent focus
54 981-57 167 nt · Reverse (-)
CDL20_RS06770GCF_002865285#CDL20_RS06770
RROmpR
57 139-57 837 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865285#CDL20_RS06765The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0717120
Simplified PFAM architecture for HKOC_0717120
PFAM domain coverage: 161 / 728 aa (22.1%)
1 aa728 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[497-561] | HATPase_c[609-704]
- Domain count: 2
- Matched identifier: HKOC_0717120
- Positioned domains: HisKA 497-561 ; HATPase_c 609-704
Cluster members and taxonomy
Representative gene: GCF_002865285#CDL20_RS06765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865285
AssemblyASM286528v1 · Scaffoldhaploid
Genome composition3 072 153 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 74 · HK 37 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key