1 HisKA#1
286-353 aa · 68 aa · 13.2% of protein
Raw token
HisKA:286:0.00000000000151:353:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL20_RS06350
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865285
ClassHKTypeClassicLength514 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865285#CDL20_RS06350Stable P2CS identifier used across views.
GenomeGCF_002865285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length514 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 514 aa (35.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa514 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
397-509 aa · 113 aa · 22.0% of protein
Raw token
HATPase_c:397:1.72e-28:509:113:109- Raw architecture: HisKA:286:0.00000000000151:353:68:64#HATPase_c:397:1.72e-28:509:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865285::NZ_NIHW01000012.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42807-45048Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL20_06340RefSeq proteinWP_101870975.1
Context group ID
GCF_002865285::NZ_NIHW01000012.1::G00006Context members
CDL20_RS06350CDL20_RS06355
Partner locus tags
CDL20_RS06350CDL20_RS06355
Partner old locus tags
CDL20_06340CDL20_06345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101870975.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5Q0Z4Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5Q0Z4_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL20_RS06350Primary locus identifier stored in the genes table.
Old locus tagCDL20_06340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHW01000012.1Sequence record reported by the local genomic context database.
Genomic interval42 807-44 351 nt1 545 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 807-45 048 ntGCF_002865285::NZ_NIHW01000012.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865285::NZ_NIHW01000012.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHW01000012.1All displayed genes belong to this local TCS context.
Neighborhood span42 807-45 048 nt2 242 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 807 nt45 048 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL20_RS06350GCF_002865285#CDL20_RS06350
HKClassicCurrent focus
42 807-44 351 nt · Forward (+)
CDL20_RS06355GCF_002865285#CDL20_RS06355
RROmpR
44 344-45 048 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865285#CDL20_RS06350The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1411933
Simplified PFAM architecture for HKOC_1411933
PFAM domain coverage: 286 / 514 aa (55.6%)
1 aa514 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[17-123] | HisKA[286-353] | HATPase_c[398-508]
- Domain count: 3
- Matched identifier: HKOC_1411933
- Positioned domains: DUF4118 17-123 ; HisKA 286-353 ; HATPase_c 398-508
Cluster members and taxonomy
Representative gene: GCF_002865285#CDL20_RS06350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865285
AssemblyASM286528v1 · Scaffoldhaploid
Genome composition3 072 153 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 74 · HK 37 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key