1 HAMP#1
171-240 aa · 70 aa · 15.0% of protein
Raw token
HAMP:171:0.000000000461:240:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL20_RS05875
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865285
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865285#CDL20_RS05875Stable P2CS identifier used across views.
GenomeGCF_002865285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 467 aa (51.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-304 aa · 60 aa · 12.8% of protein
Raw token
HisKA:245:0.000000000000287:304:60:643 HATPase_c#3
356-464 aa · 109 aa · 23.3% of protein
Raw token
HATPase_c:356:6.31e-31:464:109:109- Raw architecture: HAMP:171:0.000000000461:240:70:69#HisKA:245:0.000000000000287:304:60:64#HATPase_c:356:6.31e-31:464:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865285::NZ_NIHW01000011.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17960-20084Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL20_05865RefSeq proteinWP_101882257.1
Context group ID
GCF_002865285::NZ_NIHW01000011.1::G00004Context members
CDL20_RS05870CDL20_RS05875
Partner locus tags
CDL20_RS05870CDL20_RS05875
Partner old locus tags
CDL20_05860CDL20_05865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101882257.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5Q0Y7Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5Q0Y7_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL20_RS05875Primary locus identifier stored in the genes table.
Old locus tagCDL20_05865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHW01000011.1Sequence record reported by the local genomic context database.
Genomic interval18 681-20 084 nt1 404 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 960-20 084 ntGCF_002865285::NZ_NIHW01000011.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865285::NZ_NIHW01000011.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHW01000011.1All displayed genes belong to this local TCS context.
Neighborhood span17 960-20 084 nt2 125 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 960 nt20 084 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL20_RS05870GCF_002865285#CDL20_RS05870
RROmpR
17 960-18 661 nt · Forward (+)
CDL20_RS05875GCF_002865285#CDL20_RS05875
HKClassicCurrent focus
18 681-20 084 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865285#CDL20_RS05875The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1750746
Simplified PFAM architecture for HKOC_1750746
PFAM domain coverage: 215 / 467 aa (46.0%)
1 aa467 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[195-239] | HisKA[246-307] | HATPase_c[357-464]
- Domain count: 3
- Matched identifier: HKOC_1750746
- Positioned domains: HAMP 195-239 ; HisKA 246-307 ; HATPase_c 357-464
Cluster members and taxonomy
Representative gene: GCF_002865285#CDL20_RS05875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865285
AssemblyASM286528v1 · Scaffoldhaploid
Genome composition3 072 153 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 74 · HK 37 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key