1 Response_reg#1
4-112 aa · 109 aa · 47.0% of protein
Raw token
Response_reg:4:9.63e-23:112:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL20_RS00410
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_002865285
ClassRRTypeLytTRLength232 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002865285#CDL20_RS00410Stable P2CS identifier used across views.
GenomeGCF_002865285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 232 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 LytTR#2
140-224 aa · 85 aa · 36.6% of protein
Raw token
LytTR:140:0.00000000000000846:224:90:98- Raw architecture: Response_reg:4:9.63e-23:112:115:111#LytTR:140:0.00000000000000846:224:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002865285::NZ_NIHW01000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span85736-86434Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL20_00410RefSeq proteinWP_022038061.1
Context group ID
GCF_002865285::NZ_NIHW01000001.1::G00002Context members
CDL20_RS00410
Partner locus tags
CDL20_RS00410
Partner old locus tags
CDL20_00410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022038061.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5PPD1Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5PPD1_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL20_RS00410Primary locus identifier stored in the genes table.
Old locus tagCDL20_00410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHW01000001.1Sequence record reported by the local genomic context database.
Genomic interval85 736-86 434 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span85 736-86 434 ntGCF_002865285::NZ_NIHW01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865285::NZ_NIHW01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span85 736-86 434 nt699 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 736 nt86 434 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CDL20_RS00410GCF_002865285#CDL20_RS00410
RRLytTRCurrent focus
85 736-86 434 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865285#CDL20_RS00410The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1127882
Simplified PFAM architecture for RROC_1127882
PFAM domain coverage: 193 / 232 aa (83.2%)
1 aa232 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-111] | LytTR[140-224]
- Domain count: 2
- Matched identifier: RROC_1127882
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; LytTR 140-224 ; LytTR 140-224
Cluster members and taxonomy
Representative gene: GCF_002865285#CDL20_RS00410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865285
AssemblyASM286528v1 · Scaffoldhaploid
Genome composition3 072 153 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 74 · HK 37 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key