1 HAMP#1
145-214 aa · 70 aa · 15.3% of protein
Raw token
HAMP:145:0.0000000000219:214:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CDL20_RS00080
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_002865285
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002865285#CDL20_RS00080Stable P2CS identifier used across views.
GenomeGCF_002865285Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage235 / 458 aa (51.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
243-303 aa · 61 aa · 13.3% of protein
Raw token
HisKA:243:0.000000000202:303:61:643 HATPase_c#3
349-452 aa · 104 aa · 22.7% of protein
Raw token
HATPase_c:349:1.07e-18:452:109:109- Raw architecture: HAMP:145:0.0000000000219:214:70:69#HisKA:243:0.000000000202:303:61:64#HATPase_c:349:1.07e-18:452:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002865285::NZ_NIHW01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15731-17762Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCDL20_00080RefSeq proteinWP_101881786.1
Context group ID
GCF_002865285::NZ_NIHW01000001.1::G00001Context members
CDL20_RS00075CDL20_RS00080
Partner locus tags
CDL20_RS00075CDL20_RS00080
Partner old locus tags
CDL20_00075CDL20_00080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_101881786.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N5Q3N7Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N5Q3N7_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCDL20_RS00080Primary locus identifier stored in the genes table.
Old locus tagCDL20_00080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_NIHW01000001.1Sequence record reported by the local genomic context database.
Genomic interval16 386-17 762 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 731-17 762 ntGCF_002865285::NZ_NIHW01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002865285::NZ_NIHW01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_NIHW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span15 731-17 762 nt2 032 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 731 nt17 762 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CDL20_RS00075GCF_002865285#CDL20_RS00075
RROmpR
15 731-16 402 nt · Forward (+)
CDL20_RS00080GCF_002865285#CDL20_RS00080
HKClassicCurrent focus
16 386-17 762 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002865285#CDL20_RS00080The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1861893
Simplified PFAM architecture for HKOC_1861893
PFAM domain coverage: 215 / 458 aa (46.9%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[164-213] | HisKA[241-303] | HATPase_c[350-451]
- Domain count: 3
- Matched identifier: HKOC_1861893
- Positioned domains: HAMP 164-213 ; HisKA 241-303 ; HATPase_c 350-451
Cluster members and taxonomy
Representative gene: GCF_002865285#CDL20_RS00080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_002865285
AssemblyASM286528v1 · Scaffoldhaploid
Genome composition3 072 153 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 74 · HK 37 · RR 37CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key